Factsheet for Zm00001d040381_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007039_P001
Zm00001d016615_P002
Zm00001d022322_P001
Zm00001d045433_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	Zm00001d016615_P002	AT5G07300.1	20706207
AT1G44110.1	Zm00001d007039_P001	AT5G14170.1	20706207
AT1G44110.1	Zm00001d022322_P001	AT5G14170.1	20706207
AT1G44110.1	Zm00001d045433_P001	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032128_P001	Maize	cytosol	24.02	81.01
Os12t0298950-00	Rice	nucleus	65.48	78.08
Os01t0233500-01	Rice	nucleus, plastid	74.11	77.76
Os01t0233100-00	Rice	nucleus, plastid	70.54	76.58
Zm00001d009011_P001	Maize	nucleus, plastid	71.11	74.31
TraesCS3D01G164600.1	Wheat	plastid	71.11	74.31
TraesCS3A01G157000.1	Wheat	plastid	71.29	74.07
TraesCS3B01G183400.1	Wheat	plastid	70.54	73.73
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	44.28	63.78
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	59.66	63.35
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	59.29	63.2
KRH64625	Soybean	plastid	54.6	60.12
Zm00001d021353_P002	Maize	mitochondrion, nucleus	22.51	60.0
KRH53279	Soybean	plastid	53.47	59.38
VIT_18s0001g02060.t01	Wine grape	plastid	54.78	58.99
Bra032202.1-P	Field mustard	plastid	45.78	57.82
AT1G44110.1	Thale cress	plastid	49.72	57.61
CDY25649	Canola	plastid	46.9	57.21
Solyc11g005090.1.1	Tomato	plastid	51.59	56.12
CDY65994	Canola	plastid	46.53	55.98
PGSC0003DMT400015424	Potato	plastid	49.53	55.93
Bra023606.1-P	Field mustard	plastid	43.71	55.61
CDX85466	Canola	plastid	43.9	55.45
CDY02719	Canola	plastid	44.28	55.01
KRH17986	Soybean	plastid	50.28	53.28
KRH16410	Soybean	plastid	50.09	52.98
CDX87520	Canola	nucleus	38.09	52.59
Bra015671.1-P	Field mustard	plastid	37.9	52.33
CDY62408	Canola	nucleus, plasma membrane, plastid	20.64	52.13
CDX88368	Canola	plastid	37.15	52.11
CDY41784	Canola	plastid	33.21	52.06
Zm00001d010404_P001	Maize	nucleus	43.9	48.25
AT1G77390.1	Thale cress	plastid	39.96	48.19
CDX92090	Canola	mitochondrion, nucleus	31.33	46.78
Zm00001d033365_P002	Maize	nucleus	32.46	46.51
Bra022173.1-P	Field mustard	nucleus, plastid	32.65	46.15
Zm00001d013744_P001	Maize	nucleus	29.46	43.98
Zm00001d019469_P001	Maize	extracellular	10.88	40.56
Zm00001d030849_P001	Maize	nucleus	32.08	40.43
Zm00001d041334_P001	Maize	nucleus, plastid	31.52	38.44
Zm00001d014756_P006	Maize	nucleus, plastid	34.33	35.12
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	30.21	33.2
Zm00001d036360_P002	Maize	nucleus	23.08	29.01
Zm00001d012560_P002	Maize	nucleus, plastid	24.02	28.51
Zm00001d010656_P001	Maize	nucleus	22.33	26.68
Zm00001d043164_P002	Maize	nucleus	24.02	26.45
Zm00001d026129_P001	Maize	nucleus	20.64	25.82
Zm00001d048127_P001	Maize	plastid	22.7	25.26
Zm00001d002662_P010	Maize	nucleus	20.83	24.4
Zm00001d008221_P001	Maize	nucleus	20.64	22.96
Zm00001d020033_P001	Maize	nucleus	21.2	20.77
Zm00001d020996_P001	Maize	nucleus	20.26	19.85

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	UniProt:A0A1D6MQH1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	ProteinID:ONM31261.1
PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00084274AF	EnsemblPlantsGene:Zm00001d040381	EnsemblPlants:Zm00001d040381_P001	EnsemblPlants:Zm00001d040381_T001
SEG:seg	:	:	:	:	:

Description

Cyclin-A1-1

Coordinates

chr3:+:40861828..40871645

Molecular Weight (calculated)

58832.1 Da

IEP (calculated)

8.261

GRAVY (calculated)

-0.305

Length

533 amino acids

Sequence
(BLAST)

001: MSTIAASRRS SSSSSSATAK RPAIADGPGG PKATAAQAKK RVALGNITNV AARGGRASVG GSLGNVMAPT SSAKLNPTVP LKKPSLATSA RSVSSSIRGS
101: ADKPASIKPA PPVARHGSAT QRHNNVPPPK VPTIADVPSR APALVSCTGL VSPGRSGDSV SSDETMSTCD SMKSPDFEYV DNQDTSMLAS LQRRTSEHLR
201: ISEDRDVEEN KRKKNAVAPM EIDRICDVDS EYEDPQLCAT LASDIYMHLR EAECFTFSQT KKRPSTDFME TIQKDVNPSM RAILIDWLVE VAEEYRLVPD
301: TLYLTVNYID RYLSGNEISR QRLQLLGVAC MLIAACHYDV SVLIWHVGNF KFRKYEEICA PQVEEFCYIT DNTYFRDEVL DMEASVLNYL KFEMTAPTAK
401: CFLRRFARAA QACDEDPALH LEFLANYIAE LSLLEYSLLS YPPSLIAASA IFLARFILQP TKYPWNSTLA HYTQYKPSKL SECVKALHRL CSVGSGSNLP
501: AIREKYSQHK YKFVAKKQCP PQIPTEFFRD TTC

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.