Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0521300-01 | |
| Os04t0382100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G44110.1 | Os02t0521300-01 | AT5G07300.1 | 20706207 |
| AT1G44110.1 | Os04t0382100-01 | AT5G14170.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0298950-00 | Rice | nucleus | 85.54 | 93.96 |
| Os01t0233500-01 | Rice | nucleus, plastid | 92.46 | 89.37 |
| TraesCS3D01G164600.1 | Wheat | plastid | 81.47 | 78.43 |
| TraesCS3B01G183400.1 | Wheat | plastid | 81.26 | 78.24 |
| TraesCS3A01G157000.1 | Wheat | plastid | 81.26 | 77.78 |
| Zm00001d032128_P001 | Maize | cytosol | 24.85 | 77.22 |
| Os05t0237100-01 | Rice | extracellular | 29.33 | 73.1 |
| Zm00001d040381_P001 | Maize | plastid | 76.58 | 70.54 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 70.26 | 67.65 |
| GSMUA_Achr2P19220_001 | Banana | nucleus, plastid | 65.17 | 63.74 |
| GSMUA_Achr5P06960_001 | Banana | nucleus, plastid | 64.77 | 63.6 |
| VIT_18s0001g02080.t01 | Wine grape | nucleus, plastid | 46.44 | 61.62 |
| Bra032202.1-P | Field mustard | plastid | 49.49 | 57.58 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 23.42 | 57.5 |
| KRH64625 | Soybean | plastid | 55.8 | 56.61 |
| KRH53279 | Soybean | plastid | 55.19 | 56.46 |
| VIT_18s0001g02060.t01 | Wine grape | plastid | 56.62 | 56.16 |
| CDY25649 | Canola | plastid | 49.69 | 55.84 |
| AT1G44110.1 | Thale cress | plastid | 52.14 | 55.65 |
| CDY65994 | Canola | plastid | 49.49 | 54.85 |
| Solyc11g005090.1.1 | Tomato | plastid | 54.58 | 54.69 |
| PGSC0003DMT400015424 | Potato | plastid | 52.14 | 54.24 |
| Bra023606.1-P | Field mustard | plastid | 45.62 | 53.46 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 22.81 | 53.08 |
| CDX85466 | Canola | plastid | 45.62 | 53.08 |
| CDY02719 | Canola | plastid | 46.23 | 52.91 |
| KRH17986 | Soybean | plastid | 52.95 | 51.69 |
| CDX87520 | Canola | nucleus | 40.33 | 51.3 |
| KRH16410 | Soybean | plastid | 52.34 | 50.99 |
| Bra015671.1-P | Field mustard | plastid | 39.92 | 50.78 |
| CDX88368 | Canola | plastid | 39.1 | 50.53 |
| CDY41784 | Canola | plastid | 34.83 | 50.29 |
| AT1G77390.1 | Thale cress | plastid | 42.16 | 46.83 |
| CDX92090 | Canola | mitochondrion, nucleus | 32.59 | 44.82 |
| Bra022173.1-P | Field mustard | nucleus, plastid | 33.81 | 44.03 |
| Os12t0581800-01 | Rice | nucleus, plastid | 34.42 | 43.9 |
| Os12t0502300-01 | Rice | nucleus, plastid | 35.85 | 35.92 |
| Os06t0726800-01 | Rice | nucleus | 23.42 | 27.45 |
| Os01t0281200-01 | Rice | nucleus | 23.22 | 26.95 |
| Os04t0563700-01 | Rice | mitochondrion | 22.81 | 26.67 |
| Os03t0607600-00 | Rice | nucleus | 31.77 | 25.66 |
| Os05t0493500-00 | Rice | nucleus | 24.85 | 25.05 |
| Os03t0208700-00 | Rice | nucleus | 20.57 | 24.69 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 19.14 | 23.74 |
| Os03t0208800-00 | Rice | nucleus | 12.22 | 15.11 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.1 | UniProt:A0A0P0V089 | ProteinID:BAS71195.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | EnsemblPlantsGene:Os01g0233100 | EnsemblPlants:Os01t0233100-00 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF239 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000393B27F | SEG:seg | : |
Description
Similar to Cyclin-A1-2. (Os01t0233100-00)
Coordinates
chr1:-:7370362..7381112
Molecular Weight (calculated)
54123.3 Da
IEP (calculated)
6.257
GRAVY (calculated)
-0.216
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKRPAAGE GGGKAAAGAA AAKKRVALVN ITNVAAAANN AVREGSLAAS SSFFKFNSAT WAAPVKKGSL ASGRNVCTNR VSAVKSASAK PAPAISRHES
101: APQKESVIPP KVLSIVPTAA PAPVTVPCSS FVSPMHSGDS VSVDETMSMC DSMKSPDFEY IDNGDSSSVL GSLQRRANEN LRISEDRDVE ETKWNKDAPS
201: PMEIDQICDV DNNYEDPQLC ATLASDIYMH LREAETRKRP STDFMETIQK DVNPSMRAIL IDWLVEVAEE YRLVPDTLYL TVNYIDRYLS GNEINRQRLQ
301: LLGVACMLIA AKYEEICAPQ VEEFCYITDN TYFRDEVLEM EASVLNYLKF EVTAPTAKCF LRRFVRVAQV SDEDPALHLE FLANYVAELS LLEYNLLSYP
401: PSLVAASAIF LAKFILQPTK HPWNSTLAHY TQYKSSELSD CVKALHRLFS VGPGSNLPAI REKYTQHKYK FVAKKHCPPS VPSEFFRDAT C
101: APQKESVIPP KVLSIVPTAA PAPVTVPCSS FVSPMHSGDS VSVDETMSMC DSMKSPDFEY IDNGDSSSVL GSLQRRANEN LRISEDRDVE ETKWNKDAPS
201: PMEIDQICDV DNNYEDPQLC ATLASDIYMH LREAETRKRP STDFMETIQK DVNPSMRAIL IDWLVEVAEE YRLVPDTLYL TVNYIDRYLS GNEINRQRLQ
301: LLGVACMLIA AKYEEICAPQ VEEFCYITDN TYFRDEVLEM EASVLNYLKF EVTAPTAKCF LRRFVRVAQV SDEDPALHLE FLANYVAELS LLEYNLLSYP
401: PSLVAASAIF LAKFILQPTK HPWNSTLAHY TQYKSSELSD CVKALHRLFS VGPGSNLPAI REKYTQHKYK FVAKKHCPPS VPSEFFRDAT C
001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS
Arabidopsis Description
CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.