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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0611000-01
Os01t0897000-01
Os01t0900800-01
Os02t0123100-01
Os02t0205200-01
Os02t0527500-00
Os02t0603600-01
Os03t0146300-01
Os03t0328501-00
Os03t0352300-01
Os04t0443300-00
Os04t0485000-01
Os04t0489600-02
Os04t0494600-01
Os04t0494800-01
Os04t0494900-01
Os04t0494950-01
Os04t0495000-00
Os04t0608500-01
Os04t0620700-01
Os04t0661900-01
Os05t0156600-01
Os07t0132600-00
Os07t0661800-01
Os08t0192900-01
Os08t0224700-01
Os08t0512600-01
Os09t0446200-01
Os10t0577200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11520.1 Os01t0900800-01 AT1G05805.1 20706207
AT3G11520.1 Os02t0603600-01 AT1G05805.1 20706207
AT3G11520.1 Os04t0489600-02 AT1G05805.1 20706207
AT3G11520.1 Os03t0352300-01 AT1G56110.1 20706207
AT3G11520.1 Os07t0661800-01 AT1G56110.1 20706207
AT3G11520.1 Os05t0156600-01 AT3G61650.1 20706207
AT3G11520.1 Os09t0446200-01 AT5G06680.1 20706207
AT3G11520.1 Os10t0577200-01 AT5G46780.1 20706207
AT4G37490.1 Os08t0512600-01 AT1G20930.1 20706207
AT4G37490.1 Os08t0512600-01 AT1G76540.1 20706207
AT4G37490.1 Os02t0123100-01 AT3G48750.1 12065421
AT4G37490.1 Os01t0897000-01 AT3G54180.1 12065421
AT5G06150.1 Os04t0608500-01 AT1G04810.1 20706207
AT5G06150.1 Os08t0224700-01 AT1G04810.1 20706207
AT5G06150.1 Os08t0512600-01 AT1G20930.1 20706207
AT5G06150.1 Os04t0620700-01 AT1G48920.1 20706207
AT5G06150.1 Os08t0192900-01 AT1G48920.1 20706207
AT5G06150.1 Os04t0443300-00 AT1G71380.1 20706207
AT5G06150.1 Os03t0146300-01 AT2G27960.1 20706207
AT5G06150.1 Os03t0146300-01 AT2G27970.1 20706207
AT5G06150.1 Os04t0661900-01 AT3G11270.1 20706207
AT5G06150.1 Os01t0897000-01 AT3G54180.1 20706207
AT5G06150.1 Os04t0485000-01 AT4G24820.1 20706207
AT5G06150.1 Os01t0611000-01 AT5G25460.1 20706207
AT5G06150.1 Os02t0205200-01 AT5G25460.1 20706207
AT5G06150.1 Os02t0527500-00 AT5G25460.1 20706207
AT5G06150.1 Os03t0328501-00 AT5G25460.1 20706207
AT5G06150.1 Os04t0494600-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494800-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494900-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494950-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0495000-00 AT5G25460.1 20706207
AT5G06150.1 Os07t0132600-00 AT5G25460.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G001680.1 Barley nucleus 45.79 69.69
HORVU1Hr1G068080.1 Barley plastid 46.82 66.67
HORVU1Hr1G068010.7 Barley mitochondrion, nucleus 54.83 63.57
TraesCS1D01G309300.1 Wheat nucleus, plastid 56.06 62.61
TraesCS1B01G320900.1 Wheat nucleus, plastid 55.85 62.39
TraesCS1A01G309800.1 Wheat nucleus 55.44 61.93
TraesCS1D01G309400.1 Wheat nucleus 55.24 61.56
HORVU0Hr1G001690.16 Barley nucleus, peroxisome 54.83 60.96
TraesCS1B01G321000.1 Wheat nucleus 54.21 60.55
HORVU1Hr1G068160.2 Barley nucleus, plastid 55.03 60.5
HORVU0Hr1G026010.1 Barley nucleus, plastid 55.03 60.5
Zm00001d010656_P001 Maize nucleus 50.51 55.16
EES18429 Sorghum mitochondrion 49.08 51.96
PGSC0003DMT400058457 Potato nucleus 42.71 49.76
KRH66720 Soybean endoplasmic reticulum, vacuole 19.92 48.74
GSMUA_AchrUn_... Banana nucleus 29.57 48.32
VIT_08s0040g00930.t01 Wine grape nucleus 44.76 48.12
KRG95055 Soybean nucleus 44.76 47.91
Solyc01g009040.2.1 Tomato nucleus 42.71 47.82
CDY69551 Canola nucleus 34.09 46.76
KRH66713 Soybean nucleus 43.53 46.7
Os01t0281200-01 Rice nucleus 40.25 46.34
CDY62475 Canola nucleus 33.26 46.15
Solyc06g073610.2.1 Tomato nucleus 41.68 46.14
VIT_13s0067g01420.t01 Wine grape nucleus 43.74 46.1
Bra002046.1-P Field mustard nucleus 36.96 45.8
PGSC0003DMT400015245 Potato nucleus 41.27 45.79
Solyc10g078330.1.1 Tomato nucleus 39.63 45.63
PGSC0003DMT400018480 Potato nucleus 39.63 45.41
KRH66715 Soybean nucleus 36.55 45.41
Solyc10g080950.1.1 Tomato nucleus 42.92 45.24
Bra028741.1-P Field mustard nucleus 38.4 45.06
AT3G11520.1 Thale cress nucleus 37.99 44.69
KRH73516 Soybean nucleus 40.25 44.55
PGSC0003DMT400072211 Potato nucleus 42.3 44.4
VIT_06s0009g02090.t01 Wine grape nucleus 37.99 44.26
KRH66718 Soybean plastid 33.88 44.24
Bra005880.1-P Field mustard nucleus, plastid 37.58 44.2
AT4G37490.1 Thale cress nucleus 38.81 44.16
KRH14611 Soybean nucleus 39.43 43.74
CDX69311 Canola nucleus 37.37 43.44
CDY11354 Canola plastid 38.6 43.42
Bra011769.1-P Field mustard nucleus 37.78 42.99
CDX75659 Canola nucleus 37.58 42.76
CDX80988 Canola plastid 37.58 42.76
AT2G26760.1 Thale cress nucleus 33.88 42.64
AT5G06150.1 Thale cress nucleus 38.81 42.47
KRG95056 Soybean cytosol 33.26 41.86
Os02t0627800-00 Rice cytosol, mitochondrion, peroxisome 31.62 38.89
Os06t0726800-01 Rice nucleus 31.83 36.99
Os04t0563700-01 Rice mitochondrion 31.42 36.43
Os05t0237100-01 Rice extracellular 13.76 34.01
CDY14091 Canola plastid 39.22 29.12
Os12t0581800-01 Rice nucleus, plastid 21.97 27.79
AT1G34460.5 Thale cress cytosol 27.1 26.51
Os12t0298950-00 Rice nucleus 24.02 26.17
CDY04980 Canola nucleus 38.4 26.04
Os01t0233100-00 Rice nucleus, plastid 25.05 24.85
Os01t0233500-01 Rice nucleus, plastid 25.05 24.02
Os12t0502300-01 Rice nucleus, plastid 23.0 22.86
Os03t0208700-00 Rice nucleus 17.45 20.78
Os03t0607600-00 Rice nucleus 23.41 18.75
Os03t0208800-00 Rice nucleus 6.98 8.56
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2UniProt:A0A0P0WP44ProteinID:BAS94683.1InterPro:Cyclin-likeInterPro:Cyclin-like_sf
InterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0007049GO:GO:0008150GO:GO:0009987GO:GO:0051301EnsemblPlantsGene:Os05g0493500EnsemblPlants:Os05t0493500-00
PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292PANTHER:PTHR10177PANTHER:PTHR10177:SF267
SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI000393863FSEG:seg:
Description
CYCLIN-B1-2Similar to Cyclin-B1-5. (Os05t0493500-00)
Coordinates
chr5:+:24240791..24243402
Molecular Weight (calculated)
54481.8 Da
IEP (calculated)
10.401
GRAVY (calculated)
-0.459
Length
487 amino acids
Sequence
(BLAST)
001: RESWKSEERR GGGEDGRLLR SGREFAGVLG VLGARRRRRR SNRRPYAWRR GTSARLPLRS RRTEVLQSQR GSRRPPPPPP PADLVRETGK PSAISATKIQ
101: LPEGINRPIT RSFGAQLLKK AQENAVAANK IVVQNPARKE PAPKPAKKVV PRPENAAKAS TGAGVNENKK PSESEGAGSS SGGSALKYSR KKVVNTLTSV
201: LTARSKHACG ITEKPKEVVE DIDKLDGDNQ LAVVEYIEDI YNFYRTAQLE RRPTDYMSSQ VEVNPKMRAI LADWIIDVHY KFELMPETLY LTMYVIDRYL
301: SLQPVLRREL QLVGVAAMLI ASKYEEMWAP EVQDLIHVCD NAYSRQHILA MEKNILNRLQ WNITVPTPYV FLLRFIKAAG GDKELENMVF FFSEMALKEY
401: GMASLCPSLV AASAVYAAQC TLKRSPLWTS TLKHHTGFTE SQLRECAKVL VNAHAAAPES KLKTAYRKYA SEQLGRVSLR PPAVCLA
Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.