Factsheet for Os05t0156600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19069	Sorghum	cytosol	97.87	97.87
Zm00001d037582_P001	Maize	cytosol, extracellular	97.23	97.23
TraesCS1D01G107300.1	Wheat	cytosol	96.59	96.59
HORVU1Hr1G023030.2	Barley	cytosol	96.59	96.59
TraesCS1B01G124800.1	Wheat	cytosol	96.59	96.59
TraesCS1A01G099400.1	Wheat	cytosol	96.59	96.59
GSMUA_Achr1P14750_001	Banana	cytosol	96.59	94.77
VIT_15s0046g01350.t01	Wine grape	cytosol	94.03	93.04
AT3G61650.1	Thale cress	cytosol	92.96	91.98
AT5G05620.1	Thale cress	cytosol	92.54	91.56
KRH68880	Soybean	endoplasmic reticulum	92.32	91.35
Bra007622.1-P	Field mustard	cytosol	91.9	91.12
CDX71723	Canola	cytosol	91.9	91.12
CDY11370	Canola	cytosol	91.9	91.12
KRG97131	Soybean	cytosol	91.47	90.51
Zm00001d009780_P003	Maize	cytosol	97.23	90.12
PGSC0003DMT400039263	Potato	cytosol	90.62	89.66
Solyc03g111380.2.1	Tomato	cytosol	90.41	89.45
Os06t0671900-01	Rice	plasma membrane	33.69	35.43
Os03t0780600-01	Rice	plastid	33.26	35.14
Os05t0413200-01	Rice	plasma membrane	33.05	34.91
Os03t0105600-01	Rice	plasma membrane	33.26	34.9
Os01t0282800-02	Rice	plasma membrane	33.05	34.68
Os02t0167300-01	Rice	plasma membrane	33.05	34.68
Os01t0805900-01	Rice	plasma membrane	33.05	34.68
Os03t0661300-01	Rice	plasma membrane	32.62	34.3
Os11t0247300-01	Rice	plasma membrane	30.28	31.49
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	30.06	31.4
Os03t0726100-01	Rice	nucleus	29.85	31.04
Os07t0574800-02	Rice	plasma membrane	29.0	30.22
Os03t0780800-01	Rice	cytosol	1.49	2.95

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:4337861	ProteinID:AAS55777.2
ProteinID:AAV32229.1	EMBL:AF036957	EMBL:AK102557	ProteinID:BAF16612.1	ProteinID:BAS92366.1	GO:GO:0000166
GO:GO:0000930	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005815	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0031122	InterPro:Gamma_tubulin	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
UniProt:O49068	EnsemblPlantsGene:Os05g0156600	EnsemblPlants:Os05t0156600-01	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01164	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000000B32	RefSeq:XP_015639857.1

Description

TUBG2Similar to Tubulin gamma-1 chain (Gamma-1 tubulin). (Os05t0156600-01)

Coordinates

chr5:-:3308054..3312596

Molecular Weight (calculated)

52873.1 Da

IEP (calculated)

5.621

GRAVY (calculated)

-0.286

Length

469 amino acids

Sequence
(BLAST)

001: MPREIITIQV GQCGNQIGME FWKQLCLEHG IGKDGLLEDF ATQGGDRKDV FFYQADDQHY IPRALLVDLE PRVINGIQNS EYRNLYNHEN IFVAEHGGGA
101: GNNWASGYHQ GEQVVDDIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL ANPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QVNMIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSRKSPYVQ TTHRVSGLML ANHTSIRHLF SKCLGQYEKL
401: RKKQAFLDNY RKFPMFEDND LSEFDESREI IESLVDEYKA CESPDYIKWG MEDAGEANVA AALDSKLVV

Best Arabidopsis Sequence Match ( AT3G61650.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF

Arabidopsis Description

TUBG1Tubulin gamma-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P38557]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.