Factsheet for Os11t0247300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 15069638
plasma membrane: 18260611
plasma membrane: 19502382
cytosol: 19685898
extracellular: 21255809
nucleus: 26035336
extracellular: 26072143
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21255809 doi

T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki

National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37669	Sorghum	cytosol	98.45	98.45
Zm00001d013367_P001	Maize	plastid	98.0	98.0
KXG37668	Sorghum	cytosol	98.0	98.0
Zm00001d033850_P003	Maize	cytosol	97.78	97.78
HORVU1Hr1G081280.1	Barley	cytosol	97.78	97.78
TraesCS1D01G353100.5	Wheat	cytosol	97.56	97.56
TraesCS1B01G364500.3	Wheat	cytosol	97.56	97.56
TraesCS1A01G350200.1	Wheat	golgi	97.56	97.56
Os03t0726100-01	Rice	nucleus	96.9	96.9
GSMUA_Achr7P17960_001	Banana	cytosol	84.7	96.22
VIT_00s1322g00010.t01	Wine grape	cytosol	58.54	96.0
Solyc12g088180.1.1	Tomato	cytosol	46.78	92.95
Os07t0574800-02	Rice	plasma membrane	91.35	91.56
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	86.47	86.86
CDY46272	Canola	cytosol	45.23	70.59
Bra020572.1-P	Field mustard	cytosol	64.08	61.75
CDY05559	Canola	mitochondrion	64.08	57.46
Os06t0671900-01	Rice	plasma membrane	42.79	43.27
Os01t0282800-02	Rice	plasma membrane	42.35	42.73
Os05t0413200-01	Rice	plasma membrane	41.91	42.57
Os01t0805900-01	Rice	plasma membrane	42.13	42.51
Os03t0105600-01	Rice	plasma membrane	41.91	42.28
Os03t0780600-01	Rice	plastid	41.46	42.12
Os02t0167300-01	Rice	plasma membrane	41.69	42.06
Os03t0661300-01	Rice	plasma membrane	41.46	41.93
Os05t0156600-01	Rice	cytosol	31.49	30.28
Os03t0780800-01	Rice	cytosol	0.89	1.69

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:4350197	ProteinID:AAX96762.1
EMBL:AB512760	ProteinID:ABA92352.1	ProteinID:ABA92353.1	EMBL:AK102560	InterPro:Alpha_tubulin	ProteinID:BAF27976.1
ProteinID:BAT13424.1	ncoils:Coil	ProteinID:EAZ17981.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EMBL:GQ848057
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EMBL:JN944368	EMBL:KY038504	EnsemblPlantsGene:Os11g0247300
EnsemblPlants:Os11t0247300-01	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	UniProt:Q0ITK1	UniProt:Q53M52	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000509494	EMBL:X91807
RefSeq:XP_015616885.1	SEG:seg	:	:	:	:

Description

TWISTED DWARF 1Alpha-tubulin protein, Cell elongation and division (Os11t0247300-01)

Coordinates

chr11:+:7960531..7963375

Molecular Weight (calculated)

49739.7 Da

IEP (calculated)

4.568

GRAVY (calculated)

-0.200

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GDYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN STSVVEVFSR IDIKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGSEFD DGDEGDEGDE Y

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.