Factsheet for Os06t0671900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
cytosol: 19685898
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0816500-01
Os05t0255600-01
Os11t0604700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	Os02t0816500-01	AT2G30410.1	20638386
AT5G44340.1	Os05t0255600-01	AT3G50960.1	18390592
AT5G44340.1	Os11t0604700-00	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36829	Soybean	nucleus	98.21	98.21
KRH11812	Soybean	nucleus	98.21	98.21
GSMUA_Achr11P...	Banana	cytosol	76.68	97.71
EER90205	Sorghum	cytosol	97.53	97.53
Zm00001d015348_P002	Maize	plastid	97.09	97.52
Os02t0167300-01	Rice	plasma membrane	97.53	97.32
VIT_10s0003g05320.t01	Wine grape	cytosol	97.09	97.3
KRH58404	Soybean	nucleus	96.41	97.29
GSMUA_Achr2P01410_001	Banana	cytosol	84.98	97.18
GSMUA_Achr8P07060_001	Banana	cytosol	84.75	97.17
HORVU6Hr1G027620.1	Barley	plasma membrane	97.09	97.09
GSMUA_Achr5P26680_001	Banana	cytosol	84.3	96.91
Os03t0780600-01	Rice	plastid	96.41	96.85
KRH42279	Soybean	cytosol	96.19	96.84
GSMUA_Achr3P23490_001	Banana	cytosol	80.94	96.78
TraesCS7D01G454200.1	Wheat	cytosol	96.64	96.64
TraesCS7A01G466600.1	Wheat	golgi	96.64	96.64
TraesCS6D01G130500.2	Wheat	golgi	96.41	96.63
CDY31638	Canola	cytosol	96.19	96.62
CDX84283	Canola	cytosol	96.41	96.41
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	96.41	96.41
TraesCS6B01G169300.1	Wheat	cytosol	95.96	96.4
GSMUA_Achr5P00290_001	Banana	cytosol	84.3	95.67
Os01t0805900-01	Rice	plasma membrane	94.84	94.63
Os05t0413200-01	Rice	plasma membrane	94.17	94.59
CDX94014	Canola	cytosol	94.39	94.39
AT5G44340.1	Thale cress	cytosol	93.95	94.37
Os03t0105600-01	Rice	plasma membrane	94.39	94.18
Os01t0282800-02	Rice	plasma membrane	94.39	94.18
CDX98679	Canola	cytosol	94.17	94.17
Bra020912.1-P	Field mustard	cytosol	94.17	94.17
CDX96965	Canola	cytosol	93.95	94.16
Bra027544.1-P	Field mustard	cytosol	93.95	94.16
AT4G20890.1	Thale cress	cytosol	93.72	94.14
CDX76444	Canola	cytosol	93.95	93.95
CDY14924	Canola	cytosol	93.95	93.95
CDY31428	Canola	cytosol	93.95	93.95
Bra039506.1-P	Field mustard	cytosol	93.95	93.95
CDY13108	Canola	cytosol	93.72	93.93
CDY60599	Canola	cytosol	93.72	93.93
Bra038795.1-P	Field mustard	cytosol	93.5	93.71
CDX82788	Canola	cytosol	93.5	93.5
CDX79013	Canola	cytosol	93.5	93.5
CDY69221	Canola	cytosol	93.27	93.48
CDY49002	Canola	cytosol	93.05	93.26
Bra033737.1-P	Field mustard	cytosol	93.05	93.26
Os03t0661300-01	Rice	plasma membrane	92.38	92.38
Bra013481.1-P	Field mustard	cytosol	92.38	92.38
Bra005395.1-P	Field mustard	cytosol	80.72	89.33
GSMUA_Achr6P19990_001	Banana	cytosol	78.92	85.02
Os03t0726100-01	Rice	nucleus	43.27	42.79
Os11t0247300-01	Rice	plasma membrane	43.27	42.79
Os07t0574800-02	Rice	plasma membrane	42.6	42.22
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	41.93	41.65
Os05t0156600-01	Rice	cytosol	35.43	33.69
Os03t0780800-01	Rice	cytosol	1.79	3.38

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:4341810	EMBL:AK069237
ProteinID:BAD46004.1	ProteinID:BAD46281.1	ProteinID:BAS77162.1	ProteinID:BAS99085.1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	ProteinID:EAZ37984.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	EMBL:L33263	EnsemblPlantsGene:Os06g0671900	EnsemblPlants:Os06t0671900-01	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245
UniProt:Q40665	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000043A486	RefSeq:XP_015643315.1	SEG:seg	:	:

Description

BETA-TUBULIN 3Similar to Tubulin beta-3 chain. (Os06t0671900-01)

Coordinates

chr6:-:27877526..27880124

Molecular Weight (calculated)

50124.2 Da

IEP (calculated)

4.467

GRAVY (calculated)

-0.358

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGKYSGDS DLQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPIG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EEEDYEEEEE DEEVAA

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.