Factsheet for Os03t0661300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.69	100.0
TraesCS4D01G015400.1	Wheat	cytosol	94.62	94.83
TraesCS4A01G296600.1	Wheat	cytosol	94.62	94.83
EER93713	Sorghum	cytosol	94.39	94.61
TraesCS4B01G017100.1	Wheat	cytosol	94.39	94.61
Zm00001d033457_P001	Maize	plasma membrane	94.17	94.38
Zm00001d013612_P002	Maize	plasma membrane	93.72	93.51
Os05t0413200-01	Rice	plasma membrane	92.6	93.02
Os03t0780600-01	Rice	plastid	92.15	92.57
Os06t0671900-01	Rice	plasma membrane	92.38	92.38
Os01t0805900-01	Rice	plasma membrane	91.93	91.72
Os02t0167300-01	Rice	plasma membrane	91.93	91.72
Os01t0282800-02	Rice	plasma membrane	91.93	91.72
Os03t0105600-01	Rice	plasma membrane	91.03	90.83
VIT_02s0025g03540.t01	Wine grape	cytosol	90.13	90.54
KRH59870	Soybean	endoplasmic reticulum	89.69	89.69
KRH41169	Soybean	cytosol	89.46	89.66
CDX68422	Canola	cytosol	56.73	88.15
HORVU4Hr1G002530.2	Barley	cytosol	94.39	85.57
Os03t0726100-01	Rice	nucleus	42.38	41.91
Os07t0574800-02	Rice	plasma membrane	41.93	41.56
Os11t0247300-01	Rice	plasma membrane	41.93	41.46
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	40.13	39.87
Os05t0156600-01	Rice	cytosol	34.3	32.62
Os03t0780800-01	Rice	cytosol	1.12	2.11

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:4333632	ProteinID:AAS07100.1
ProteinID:AAS07314.1	EMBL:AB104733	ProteinID:ABF98021.1	EMBL:AK121321	ProteinID:BAF12739.1	ProteinID:BAS85602.1
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	EnsemblPlantsGene:Os03g0661300	EnsemblPlants:Os03t0661300-01	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF246
UniProt:Q76FS2	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00001BDCDD	RefSeq:XP_015632680.1	SEG:seg	:	:

Description

BETA TUBULIN 8Beta-tubulin , Microtubules formation (Os03t0661300-01)

Coordinates

chr3:+:25942767..25946686

Molecular Weight (calculated)

49636.6 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.311

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICGEHGV DPTGTYTGTS PQQLERINVY FNEASGGRHV PRAVLMDLEP GTMDSLRSGP IGGIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGR MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPVG LSMASTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTS
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EDDYDEDDDA AAADEA

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.