Factsheet for Os03t0105600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 19502382
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0255600-01
Os11t0604700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62690.1	Os05t0255600-01	AT3G50960.1	18390592
AT5G62690.1	Os11t0604700-00	AT3G50960.1	18390592
AT5G62700.1	Os05t0255600-01	AT3G50960.1	18390592
AT5G62700.1	Os11t0604700-00	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027295_P002	Maize	plasma membrane	98.88	99.1
EER95686	Sorghum	cytosol	98.88	99.1
TraesCS5A01G534300.1	Wheat	cytosol	98.21	98.21
TraesCSU01G137900.1	Wheat	cytosol	98.21	97.99
GSMUA_Achr4P11980_001	Banana	plasma membrane	97.32	97.53
CDY67078	Canola	cytosol	85.91	97.46
TraesCS4B01G366500.1	Wheat	cytosol	97.54	97.1
VIT_02s0025g03680.t01	Wine grape	cytosol	97.09	97.09
VIT_08s0007g01630.t01	Wine grape	cytosol	96.64	96.64
Bra009710.1-P	Field mustard	cytosol	96.87	96.44
VIT_16s0050g00380.t01	Wine grape	cytosol	96.87	96.44
PGSC0003DMT400078206	Potato	cytosol	96.2	96.41
CDX88051	Canola	cytosol	91.72	96.24
CDX80390	Canola	cytosol	96.64	96.21
KRH35301	Soybean	nucleus	96.42	96.21
KRG91525	Soybean	nucleus	96.42	96.21
PGSC0003DMT400053750	Potato	cytosol	95.75	96.18
CDY38073	Canola	cytosol	96.64	96.0
CDY00319	Canola	cytosol	96.64	96.0
CDX86102	Canola	plasma membrane	96.64	96.0
CDX84345	Canola	cytosol	96.64	96.0
Bra019493.1-P	Field mustard	cytosol	96.64	96.0
Bra010114.1-P	Field mustard	cytosol	96.64	96.0
Bra018184.1-P	Field mustard	cytosol	96.42	95.99
AT5G23860.1	Thale cress	cytosol	96.42	95.99
Os01t0805900-01	Rice	plasma membrane	95.97	95.97
CDX99087	Canola	cytosol	91.5	95.78
CDY21784	Canola	cytosol	91.5	95.78
AT5G62690.1	Thale cress	cytosol	96.42	95.78
AT5G62700.1	Thale cress	cytosol	96.42	95.78
Bra033796.1-P	Field mustard	cytosol	96.2	95.77
VIT_06s0004g05870.t01	Wine grape	cytosol	95.53	95.74
Os05t0413200-01	Rice	plasma membrane	95.08	95.72
Os01t0282800-02	Rice	plasma membrane	95.53	95.53
KRH75786	Soybean	nucleus	95.75	95.32
KRH65977	Soybean	nucleus	95.75	95.32
Os02t0167300-01	Rice	plasma membrane	94.85	94.85
Os03t0780600-01	Rice	plastid	94.18	94.82
Solyc06g076640.2.1	Tomato	nucleus	95.53	94.47
Os06t0671900-01	Rice	plasma membrane	94.18	94.39
Os03t0661300-01	Rice	plasma membrane	90.83	91.03
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	95.53	89.33
Os03t0726100-01	Rice	nucleus	42.73	42.35
Os11t0247300-01	Rice	plasma membrane	42.28	41.91
Os07t0574800-02	Rice	plasma membrane	41.39	41.11
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	40.94	40.76
Os05t0156600-01	Rice	cytosol	34.9	33.26
Os03t0780800-01	Rice	cytosol	2.46	4.64

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:4331315	ProteinID:AAN60482.1
ProteinID:ABF93527.1	EMBL:AK243618	ProteinID:BAS81862.1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlantsGene:Os03g0105600
EnsemblPlants:Os03t0105600-01	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	UniProt:Q8H7U1	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00000AD298	RefSeq:XP_015631732.1
SEG:seg	:	:	:	:	:

Description

BETA-TUBULIN 2Tubulin beta-1 chain (Beta-1 tubulin). (Os03t0105600-01)

Coordinates

chr3:+:339986..341757

Molecular Weight (calculated)

50185.2 Da

IEP (calculated)

4.457

GRAVY (calculated)

-0.357

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DATGRYDGDS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGHIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEDEE EEADLQD

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.