Factsheet for GSMUA_Achr4P11980_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.69	100.0
Os03t0105600-01	Rice	plasma membrane	97.53	97.32
EER95686	Sorghum	cytosol	97.31	97.31
Zm00001d027295_P002	Maize	plasma membrane	97.31	97.31
TraesCS5A01G534300.1	Wheat	cytosol	96.86	96.64
PGSC0003DMT400053750	Potato	cytosol	96.41	96.63
TraesCSU01G137900.1	Wheat	cytosol	96.86	96.43
PGSC0003DMT400078206	Potato	cytosol	96.41	96.41
TraesCS4B01G366500.1	Wheat	cytosol	96.86	96.21
GSMUA_Achr1P17290_001	Banana	cytosol	79.37	95.94
GSMUA_Achr11P...	Banana	cytosol	75.11	95.71
Solyc06g076640.2.1	Tomato	nucleus	96.19	94.91
GSMUA_Achr6P08450_001	Banana	cytosol	81.84	94.32
GSMUA_Achr3P18460_001	Banana	cytosol	81.61	94.3
GSMUA_Achr4P05450_001	Banana	cytosol	59.19	93.95
GSMUA_Achr10P...	Banana	cytosol	89.69	93.68
GSMUA_Achr5P26680_001	Banana	cytosol	81.39	93.56
GSMUA_Achr6P16040_001	Banana	cytosol	81.84	93.35
GSMUA_Achr2P01410_001	Banana	cytosol	81.61	93.33
GSMUA_Achr8P07060_001	Banana	cytosol	81.39	93.32
GSMUA_Achr3P23490_001	Banana	cytosol	78.03	93.3
GSMUA_Achr5P00290_001	Banana	cytosol	82.06	93.13
GSMUA_AchrUn_...	Banana	cytosol	73.99	90.66
GSMUA_Achr4P26250_001	Banana	cytosol	90.13	90.13
GSMUA_Achr5P12310_001	Banana	cytosol	69.06	90.06
GSMUA_Achr6P04600_001	Banana	cytosol	84.98	89.6
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	95.96	89.54
GSMUA_Achr5P10720_001	Banana	cytosol	72.87	86.44
GSMUA_Achr8P33350_001	Banana	cytosol	58.52	86.42
GSMUA_Achr6P19990_001	Banana	cytosol	77.35	83.33
GSMUA_Achr5P21740_001	Banana	cytosol	89.46	79.32
GSMUA_Achr8P15410_001	Banana	cytosol	24.44	45.8
GSMUA_Achr6P29670_001	Banana	cytosol	22.42	45.05
GSMUA_Achr7P17960_001	Banana	cytosol	37.44	42.07
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	41.93	41.56
GSMUA_Achr6P00620_001	Banana	cytosol	30.27	41.03
GSMUA_Achr2P17250_001	Banana	cytosol	30.04	40.73
GSMUA_Achr5P14830_001	Banana	cytosol	39.01	40.56
GSMUA_Achr7P08080_001	Banana	cytosol	28.48	40.45
GSMUA_Achr7P01800_001	Banana	cytosol	36.55	40.25
GSMUA_Achr1P14750_001	Banana	cytosol	35.2	32.85

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G11980_001	EnsemblPlants:GSMUA_Achr4P11980_001	EnsemblPlants:GSMUA_Achr4T11980_001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0SN63	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0002968F51	SEG:seg	:	:	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr4G11980_001]

Coordinates

chr4:+:8736884..8738406

Molecular Weight (calculated)

50051.2 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.344

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DATGRYGGDN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDVEYEDEEE GDYEEA

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.