Factsheet for GSMUA_Achr1P17290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12310_001	Banana	cytosol	83.2	89.77
GSMUA_Achr5P10720_001	Banana	cytosol	88.35	86.7
GSMUA_Achr5P00290_001	Banana	cytosol	89.7	84.22
GSMUA_Achr5P26680_001	Banana	cytosol	88.35	84.02
GSMUA_Achr6P16040_001	Banana	cytosol	88.89	83.89
GSMUA_Achr3P23490_001	Banana	cytosol	84.01	83.11
GSMUA_Achr2P01410_001	Banana	cytosol	87.8	83.08
GSMUA_Achr8P07060_001	Banana	cytosol	87.53	83.03
GSMUA_AchrUn_...	Banana	cytosol	81.3	82.42
VIT_16s0050g00380.t01	Wine grape	cytosol	96.75	79.51
GSMUA_Achr4P11980_001	Banana	plasma membrane	95.94	79.37
KRH35301	Soybean	nucleus	95.94	79.02
KRG91525	Soybean	nucleus	95.94	79.02
Solyc03g025730.2.1	Tomato	nucleus	95.12	78.88
AT5G23860.1	Thale cress	cytosol	95.94	78.84
Bra009710.1-P	Field mustard	cytosol	95.94	78.84
CDX80390	Canola	cytosol	95.94	78.84
PGSC0003DMT400037093	Potato	cytosol	95.39	78.75
GSMUA_Achr11P...	Banana	cytosol	74.53	78.57
Solyc06g035970.2.1	Tomato	nucleus	95.12	78.52
GSMUA_Achr8P33350_001	Banana	cytosol	64.23	78.48
PGSC0003DMT400076938	Potato	cytosol	94.85	78.3
CDX88051	Canola	cytosol	89.7	77.7
GSMUA_Achr10P...	Banana	cytosol	89.16	77.05
GSMUA_Achr6P08450_001	Banana	cytosol	79.13	75.45
GSMUA_Achr3P18460_001	Banana	cytosol	78.32	74.87
GSMUA_Achr4P26250_001	Banana	cytosol	90.24	74.66
GSMUA_Achr6P19990_001	Banana	cytosol	83.47	74.4
GSMUA_Achr6P04600_001	Banana	cytosol	84.55	73.76
GSMUA_Achr4P05450_001	Banana	cytosol	56.1	73.67
GSMUA_Achr5P21740_001	Banana	cytosol	88.62	65.01
GSMUA_Achr8P15410_001	Banana	cytosol	24.66	38.24
GSMUA_Achr6P29670_001	Banana	cytosol	22.22	36.94
GSMUA_Achr7P01800_001	Banana	cytosol	38.48	35.06
GSMUA_Achr6P00620_001	Banana	cytosol	31.17	34.95
GSMUA_Achr2P17250_001	Banana	cytosol	30.89	34.65
GSMUA_Achr7P08080_001	Banana	cytosol	29.27	34.39
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	41.73	34.22
GSMUA_Achr7P17960_001	Banana	cytosol	36.31	33.75
GSMUA_Achr5P14830_001	Banana	cytosol	38.48	33.1
GSMUA_Achr1P14750_001	Banana	cytosol	37.13	28.66
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Beta-tubulin_BS	ncoils:Coil
InterPro:Epsilon_tubulin	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr1G17290_001	EnsemblPlants:GSMUA_Achr1P17290_001	EnsemblPlants:GSMUA_Achr1T17290_001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0S0N7	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01519	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000296D733
SEG:seg	:	:	:	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr1G17290_001]

Coordinates

chr1:+:12879377..12880896

Molecular Weight (calculated)

41447.7 Da

IEP (calculated)

4.307

GRAVY (calculated)

-0.341

Length

369 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGAKF WEVVCAEHGI DATGRYCGDS ELQLERVNVY YNEASCGRFS GAGNNWAKGH YTEGAELIDS VLDVVRKEAE NCDCLQGFQV
101: CHSLGGGTGS GMGTLLISKI REEYPDRMML TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN ADECMVLDNE ALYDICFRTL KLTTPSFGDL NHLISATMSG
201: VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF FMVGFAPLTS RGSQHTKEVD EQMINVQNKN SSYFVEWIPN NVKSTVCDIP PTGLKMASTF IGNSTSIQEM
301: FRRVSEQFTA MFRRKAFLHW YTGEGMDEME FTEAESNMND LVAEYQQYQD ATADVEEDYE EEEEEEEEA

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.