Factsheet for GSMUA_Achr6P04600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P20090_001
GSMUA_Achr2P14840_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	GSMUA_Achr1P20090_001	AT2G30410.1	20638386
AT5G44340.1	GSMUA_Achr2P14840_001	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.84	100.0
GSMUA_Achr11P...	Banana	cytosol	77.31	93.43
GSMUA_Achr8P07060_001	Banana	cytosol	85.34	92.8
GSMUA_Achr5P26680_001	Banana	cytosol	84.63	92.27
GSMUA_Achr3P23490_001	Banana	cytosol	81.32	92.23
GSMUA_Achr2P01410_001	Banana	cytosol	84.87	92.05
GSMUA_Achr5P00290_001	Banana	cytosol	85.11	91.6
GSMUA_Achr3P18460_001	Banana	cytosol	83.45	91.45
GSMUA_Achr6P08450_001	Banana	cytosol	83.22	90.96
GSMUA_Achr6P16040_001	Banana	cytosol	83.22	90.03
GSMUA_Achr10P...	Banana	cytosol	90.31	89.46
VIT_10s0003g05320.t01	Wine grape	cytosol	92.44	87.87
KRH11812	Soybean	nucleus	92.44	87.67
KRH36829	Soybean	nucleus	92.44	87.67
KRH58404	Soybean	nucleus	91.49	87.56
GSMUA_Achr4P05450_001	Banana	cytosol	58.16	87.54
CDY31638	Canola	cytosol	91.73	87.39
KRH42279	Soybean	cytosol	91.49	87.36
CDX84283	Canola	cytosol	91.49	86.77
CDX94014	Canola	cytosol	90.54	85.87
CDX98679	Canola	cytosol	90.54	85.87
AT5G44340.1	Thale cress	cytosol	90.07	85.81
Bra020912.1-P	Field mustard	cytosol	90.31	85.65
GSMUA_AchrUn_...	Banana	cytosol	73.52	85.44
CDY31428	Canola	cytosol	90.07	85.43
CDX76444	Canola	cytosol	90.07	85.43
Bra038795.1-P	Field mustard	cytosol	89.83	85.39
AT4G20890.1	Thale cress	cytosol	89.6	85.36
CDX82788	Canola	cytosol	89.6	84.98
GSMUA_Achr4P11980_001	Banana	plasma membrane	89.6	84.98
CDX79013	Canola	cytosol	89.6	84.98
Bra027544.1-P	Field mustard	cytosol	89.36	84.94
CDX96965	Canola	cytosol	89.36	84.94
CDY14924	Canola	cytosol	89.36	84.75
Bra039506.1-P	Field mustard	cytosol	89.36	84.75
CDY60599	Canola	cytosol	89.13	84.72
Bra033737.1-P	Field mustard	cytosol	89.13	84.72
CDY69221	Canola	cytosol	89.13	84.72
CDY13108	Canola	cytosol	89.13	84.72
GSMUA_Achr1P17290_001	Banana	cytosol	73.76	84.55
CDY49002	Canola	cytosol	88.89	84.49
Bra013481.1-P	Field mustard	cytosol	88.42	83.86
GSMUA_Achr8P33350_001	Banana	cytosol	59.81	83.77
GSMUA_Achr4P26250_001	Banana	cytosol	87.0	82.51
GSMUA_Achr5P12310_001	Banana	cytosol	65.48	80.99
Bra005395.1-P	Field mustard	cytosol	75.65	79.4
GSMUA_Achr5P10720_001	Banana	cytosol	70.21	78.99
GSMUA_Achr6P19990_001	Banana	cytosol	73.29	74.88
GSMUA_Achr5P21740_001	Banana	cytosol	88.89	74.75
GSMUA_Achr8P15410_001	Banana	cytosol	24.82	44.12
GSMUA_Achr6P29670_001	Banana	cytosol	22.46	42.79
GSMUA_Achr7P17960_001	Banana	cytosol	38.06	40.55
GSMUA_Achr5P14830_001	Banana	cytosol	40.43	39.86
GSMUA_Achr6P00620_001	Banana	cytosol	30.73	39.51
GSMUA_Achr7P01800_001	Banana	cytosol	37.83	39.51
GSMUA_Achr2P17250_001	Banana	cytosol	30.5	39.21
GSMUA_Achr7P08080_001	Banana	cytosol	29.08	39.17
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	41.61	39.11
GSMUA_Achr1P14750_001	Banana	cytosol	35.93	31.8

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G04600_001	EnsemblPlants:GSMUA_Achr6P04600_001	EnsemblPlants:GSMUA_Achr6T04600_001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0T458	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0002950CAC	SEG:seg	:	:	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr6G04600_001]

Coordinates

chr6:-:3158113..3161543

Molecular Weight (calculated)

47094.8 Da

IEP (calculated)

4.361

GRAVY (calculated)

-0.247

Length

423 amino acids

Sequence
(BLAST)

001: MREILHIQAG QCGNQIGAKF WEVICDEHAI DATGAYAGDS DLQLERISVY FNEAVGARYV PRAVLVDLEP GTMDAVRSGP FGRIFRPDNF IYGQSGAGNN
101: WAKGHYTEGA ELVDAVLDVV RSEVEKCDCL QGFQLCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADESM
201: VLDNEALYDI CFRTLKLTTP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YYALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LKMASTFVGN STAIQEMFSR GMDEMEFTEA ESNMNDLVAE
401: YQQYQDATAE EYEVEEEEEE EAA

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.