Factsheet for GSMUA_AchrUn_randomP06180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	3.3	100.0
GSMUA_Achr5P12310_001	Banana	cytosol	82.69	88.01
GSMUA_Achr5P10720_001	Banana	cytosol	86.81	84.04
GSMUA_Achr3P23490_001	Banana	cytosol	85.44	83.38
GSMUA_Achr6P16040_001	Banana	cytosol	89.29	83.12
GSMUA_Achr8P07060_001	Banana	cytosol	88.46	82.78
GSMUA_Achr5P26680_001	Banana	cytosol	88.19	82.73
GSMUA_Achr2P01410_001	Banana	cytosol	87.91	82.05
GSMUA_Achr5P00290_001	Banana	cytosol	88.46	81.93
GSMUA_Achr1P17290_001	Banana	cytosol	82.42	81.3
GSMUA_Achr4P26250_001	Banana	cytosol	96.43	78.7
GSMUA_Achr11P...	Banana	cytosol	74.73	77.71
VIT_02s0025g03540.t01	Wine grape	cytosol	94.78	77.7
GSMUA_Achr8P33350_001	Banana	cytosol	63.46	76.49
KRH41169	Soybean	cytosol	92.58	75.73
GSMUA_Achr10P...	Banana	cytosol	88.74	75.64
GSMUA_Achr6P08450_001	Banana	cytosol	80.22	75.45
GSMUA_Achr3P18460_001	Banana	cytosol	79.95	75.39
KRH59870	Soybean	endoplasmic reticulum	92.03	75.11
GSMUA_Achr4P11980_001	Banana	plasma membrane	90.66	73.99
GSMUA_Achr6P04600_001	Banana	cytosol	85.44	73.52
GSMUA_Achr4P05450_001	Banana	cytosol	54.4	70.46
GSMUA_Achr5P21740_001	Banana	cytosol	88.19	63.82
GSMUA_Achr6P19990_001	Banana	cytosol	71.7	63.04
GSMUA_Achr8P15410_001	Banana	cytosol	25.0	38.24
GSMUA_Achr6P29670_001	Banana	cytosol	22.25	36.49
GSMUA_Achr7P17960_001	Banana	cytosol	37.91	34.76
GSMUA_Achr7P08080_001	Banana	cytosol	29.12	33.76
GSMUA_Achr6P00620_001	Banana	cytosol	30.22	33.43
GSMUA_Achr2P17250_001	Banana	cytosol	30.22	33.43
GSMUA_Achr7P01800_001	Banana	cytosol	37.09	33.33
GSMUA_Achr5P14830_001	Banana	cytosol	39.01	33.1
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	39.84	32.22
GSMUA_Achr1P14750_001	Banana	cytosol	37.36	28.45

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Beta-tubulin_BS	ncoils:Coil
InterPro:Epsilon_tubulin	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_AchrUn_randomG06180_001
EnsemblPlants:GSMUA_AchrUn_randomP06180_001	EnsemblPlants:GSMUA_AchrUn_randomT06180_001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0U6S9
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01519	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF124	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00029489F1	SEG:seg	:	:

Description

Tubulin beta-7 chain [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06180_001]

Coordinates

chrchrUn_random:-:25917667..25919224

Molecular Weight (calculated)

40656.9 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.342

Length

364 amino acids

Sequence
(BLAST)

001: MREILHIQAG QCGNQIGGKF WEVVSDEHGI DPKGNYVGDS RLQLERVNVY YNEASGGRYN GAGNNWAKGH YTEGAELIDA VLDVVRKEAE NCDCLQGFQI
101: CHSLGGGTGS GMGTLLISKI REEYPDRMML TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN ADECMVLDNE ALYDICFRTL KLTNPSFGDL NHLISTTMSG
201: VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF FMMWDAKNMM CAADPRHGRY LTASAMFRGK MSTKEVDEQM IAVQNKNSSY FVEWIPNNVK SSVCDIPPTG
301: LSMSATFMGN STSIQEMFRR VSEQFTFTEA ESNMNDLVSE YQQYQDAVAD ADDDEAYGDE VEET

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.