Factsheet for GSMUA_Achr6P29670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15410_001	Banana	cytosol	89.19	83.19
KRH04356	Soybean	cytosol	85.59	75.7
PGSC0003DMT400012732	Potato	cytosol	84.68	74.9
GSMUA_Achr7P08080_001	Banana	cytosol	85.14	60.19
GSMUA_Achr6P00620_001	Banana	cytosol	85.59	57.75
GSMUA_Achr2P17250_001	Banana	cytosol	85.14	57.45
GSMUA_Achr7P01800_001	Banana	cytosol	90.09	49.38
GSMUA_Achr7P17960_001	Banana	cytosol	84.68	47.36
GSMUA_Achr5P14830_001	Banana	cytosol	90.54	46.85
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	90.54	44.67
GSMUA_Achr4P05450_001	Banana	cytosol	39.64	31.32
GSMUA_Achr8P33350_001	Banana	cytosol	36.94	27.15
PGSC0003DMT400046148	Potato	cytosol	48.65	24.94
PGSC0003DMT400077781	Potato	cytosol	44.59	24.09
GSMUA_Achr6P19990_001	Banana	cytosol	44.59	23.91
GSMUA_Achr10P...	Banana	cytosol	45.5	23.65
GSMUA_Achr5P12310_001	Banana	cytosol	36.04	23.39
GSMUA_Achr3P18460_001	Banana	cytosol	39.64	22.8
GSMUA_Achr6P08450_001	Banana	cytosol	39.19	22.48
GSMUA_Achr6P04600_001	Banana	cytosol	42.79	22.46
GSMUA_Achr4P26250_001	Banana	cytosol	45.05	22.42
GSMUA_Achr4P11980_001	Banana	plasma membrane	45.05	22.42
GSMUA_AchrUn_...	Banana	cytosol	36.49	22.25
GSMUA_Achr3P23490_001	Banana	cytosol	37.39	22.25
GSMUA_Achr1P17290_001	Banana	cytosol	36.94	22.22
GSMUA_Achr8P07060_001	Banana	cytosol	38.29	21.85
GSMUA_Achr2P01410_001	Banana	cytosol	37.84	21.54
GSMUA_Achr6P16040_001	Banana	cytosol	37.84	21.48
GSMUA_Achr5P26680_001	Banana	cytosol	36.94	21.13
GSMUA_Achr5P00290_001	Banana	cytosol	37.39	21.12
GSMUA_Achr5P10720_001	Banana	cytosol	35.59	21.01
GSMUA_Achr5P21740_001	Banana	cytosol	45.5	20.08
GSMUA_Achr11P...	Banana	cytosol	30.18	19.14
GSMUA_Achr1P14750_001	Banana	cytosol	37.84	17.57
KRH04357	Soybean	cytosol	0.0	0.0
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G29670_001
EnsemblPlants:GSMUA_Achr6P29670_001	EnsemblPlants:GSMUA_Achr6T29670_001	InterPro:IPR036525	UniProt:M0TBB2	PFAM:PF00091	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864
SUPFAM:SSF52490	InterPro:Tubulin	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000295A13F
SEG:seg	:	:	:	:	:

Description

Tubulin alpha-3/alpha-5 chain [Source:GMGC_GENE;Acc:GSMUA_Achr6G29670_001]

Coordinates

chr6:+:29858810..29861333

Molecular Weight (calculated)

24240.7 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.035

Length

222 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNAC WELYCLEHGI QPDGIMPSDT SVGVAQDAFN TFFSETSAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFSA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDA
201: NLYQLEPVDI SNHILFNHFS EI

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.