Factsheet for GSMUA_Achr2P12390_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g00480.t01	Wine grape	cytosol	97.33	97.55
GSMUA_Achr5P14830_001	Banana	cytosol	92.89	97.44
GSMUA_Achr7P01800_001	Banana	cytosol	87.33	97.04
PGSC0003DMT400010906	Potato	cytosol	95.56	95.77
GSMUA_Achr8P15410_001	Banana	cytosol	50.22	94.96
GSMUA_Achr7P17960_001	Banana	cytosol	80.0	90.68
GSMUA_Achr6P29670_001	Banana	cytosol	44.67	90.54
GSMUA_Achr2P17250_001	Banana	cytosol	59.33	81.16
GSMUA_Achr6P00620_001	Banana	cytosol	59.33	81.16
GSMUA_Achr7P08080_001	Banana	cytosol	55.78	79.94
GSMUA_Achr4P05450_001	Banana	cytosol	28.0	44.84
GSMUA_Achr8P33350_001	Banana	cytosol	28.67	42.72
GSMUA_Achr3P18460_001	Banana	cytosol	36.44	42.49
GSMUA_Achr6P08450_001	Banana	cytosol	36.44	42.38
GSMUA_Achr4P11980_001	Banana	plasma membrane	41.56	41.93
GSMUA_Achr1P17290_001	Banana	cytosol	34.22	41.73
GSMUA_Achr11P...	Banana	cytosol	32.44	41.71
GSMUA_Achr10P...	Banana	cytosol	39.56	41.69
GSMUA_Achr6P04600_001	Banana	cytosol	39.11	41.61
GSMUA_Achr2P01410_001	Banana	cytosol	36.0	41.54
GSMUA_Achr5P26680_001	Banana	cytosol	35.78	41.49
GSMUA_Achr5P00290_001	Banana	cytosol	36.22	41.48
GSMUA_Achr6P16040_001	Banana	cytosol	36.0	41.43
GSMUA_Achr8P07060_001	Banana	cytosol	35.78	41.39
GSMUA_Achr5P12310_001	Banana	cytosol	31.11	40.94
GSMUA_Achr3P23490_001	Banana	cytosol	33.78	40.75
GSMUA_Achr4P26250_001	Banana	cytosol	40.22	40.58
GSMUA_AchrUn_...	Banana	cytosol	32.22	39.84
GSMUA_Achr6P19990_001	Banana	cytosol	36.22	39.37
GSMUA_Achr5P10720_001	Banana	cytosol	32.22	38.56
GSMUA_Achr5P21740_001	Banana	cytosol	39.78	35.59
GSMUA_Achr1P14750_001	Banana	cytosol	31.78	29.92
GSMUA_Achr11P...	Banana	cytosol	0.67	25.0

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr2G12390_001	EnsemblPlants:GSMUA_Achr2P12390_001	EnsemblPlants:GSMUA_Achr2T12390_001	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	UniProt:M0S7D0	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002968D97
SEG:seg	:	:	:	:	:

Description

Tubulin alpha-3 chain [Source:GMGC_GENE;Acc:GSMUA_Achr2G12390_001]

Coordinates

chr2:-:14853797..14857040

Molecular Weight (calculated)

49632.8 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.128

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNAC WELYCLEHGI QPDGIMPSDT SVGVACDAFN TFFSETGSGK HVPRAIFVDL EPTVIDEVRT GAYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVPE ITNAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDDDEEAEDF

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.