Factsheet for GSMUA_Achr3P23490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P20090_001
GSMUA_Achr2P14840_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	GSMUA_Achr1P20090_001	AT2G30410.1	20638386
AT5G44340.1	GSMUA_Achr2P14840_001	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	3.22	100.0
GSMUA_Achr8P07060_001	Banana	cytosol	98.39	94.34
GSMUA_Achr5P26680_001	Banana	cytosol	97.86	94.07
GSMUA_Achr2P01410_001	Banana	cytosol	98.12	93.85
GSMUA_Achr5P00290_001	Banana	cytosol	96.51	91.6
GSMUA_Achr6P16040_001	Banana	cytosol	94.1	89.77
GSMUA_Achr11P...	Banana	cytosol	82.31	87.71
GSMUA_Achr8P33350_001	Banana	cytosol	69.44	85.76
GSMUA_AchrUn_...	Banana	cytosol	83.38	85.44
GSMUA_Achr1P17290_001	Banana	cytosol	83.11	84.01
GSMUA_Achr10P...	Banana	cytosol	94.91	82.9
GSMUA_Achr6P08450_001	Banana	cytosol	85.52	82.43
GSMUA_Achr3P18460_001	Banana	cytosol	84.99	82.12
Zm00001d036626_P001	Maize	cytosol	49.6	81.5
VIT_10s0003g05320.t01	Wine grape	cytosol	97.05	81.35
GSMUA_Achr6P04600_001	Banana	cytosol	92.23	81.32
KRH11812	Soybean	nucleus	97.05	81.17
KRH36829	Soybean	nucleus	97.05	81.17
EES04582	Sorghum	cytosol	96.78	80.94
Os06t0671900-01	Rice	plasma membrane	96.78	80.94
KRH58404	Soybean	nucleus	95.71	80.77
EER90205	Sorghum	cytosol	96.25	80.49
CDY31638	Canola	cytosol	95.71	80.41
KRH42279	Soybean	cytosol	95.44	80.36
Os02t0167300-01	Rice	plasma membrane	96.25	80.31
TraesCS6D01G130500.2	Wheat	golgi	95.71	80.22
Os03t0780600-01	Rice	plastid	95.44	80.18
TraesCS6B01G169300.1	Wheat	cytosol	95.17	79.95
HORVU6Hr1G027620.1	Barley	plasma membrane	95.44	79.82
CDX84283	Canola	cytosol	95.44	79.82
EER93354	Sorghum	cytosol	95.17	79.78
TraesCS5D01G424100.1	Wheat	cytosol	95.17	79.78
TraesCS5B01G418700.1	Wheat	golgi	95.17	79.78
Zm00001d015348_P002	Maize	plastid	94.91	79.73
GSMUA_Achr4P05450_001	Banana	cytosol	60.05	79.72
Zm00001d046996_P001	Maize	cytosol	49.33	79.65
GSMUA_Achr5P12310_001	Banana	cytosol	72.92	79.53
TraesCS5A01G416400.1	Wheat	cytosol	94.64	79.5
TraesCS7D01G454200.1	Wheat	cytosol	94.64	79.15
TraesCS7A01G466600.1	Wheat	golgi	94.64	79.15
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	94.37	78.92
Bra020912.1-P	Field mustard	cytosol	94.37	78.92
CDX98679	Canola	cytosol	94.37	78.92
CDX94014	Canola	cytosol	94.37	78.92
Bra038795.1-P	Field mustard	cytosol	94.1	78.88
CDY31428	Canola	cytosol	94.1	78.7
CDX76444	Canola	cytosol	94.1	78.7
AT4G20890.1	Thale cress	cytosol	93.3	78.38
AT5G44340.1	Thale cress	cytosol	93.3	78.38
CDX79013	Canola	cytosol	93.57	78.25
CDX82788	Canola	cytosol	93.57	78.25
CDY69221	Canola	cytosol	93.3	78.2
Bra033737.1-P	Field mustard	cytosol	93.3	78.2
GSMUA_Achr4P11980_001	Banana	plasma membrane	93.3	78.03
CDY49002	Canola	cytosol	93.03	77.98
Bra027544.1-P	Field mustard	cytosol	92.76	77.75
CDX96965	Canola	cytosol	92.76	77.75
CDY14924	Canola	cytosol	92.76	77.58
Bra039506.1-P	Field mustard	cytosol	92.76	77.58
CDY60599	Canola	cytosol	92.49	77.53
CDY13108	Canola	cytosol	92.49	77.53
Bra013481.1-P	Field mustard	cytosol	92.49	77.35
GSMUA_Achr5P10720_001	Banana	cytosol	77.21	76.6
GSMUA_Achr4P26250_001	Banana	cytosol	90.88	76.01
Zm00001d034022_P001	Maize	cytosol	50.94	72.52
Bra005395.1-P	Field mustard	cytosol	76.68	70.97
Zm00001d013139_P001	Maize	cytosol	55.5	70.65
HORVU5Hr1G100900.2	Barley	cytosol	95.17	70.16
GSMUA_Achr5P21740_001	Banana	cytosol	93.57	69.38
GSMUA_Achr6P19990_001	Banana	cytosol	75.07	67.63
GSMUA_Achr8P15410_001	Banana	cytosol	24.66	38.66
GSMUA_Achr6P29670_001	Banana	cytosol	22.25	37.39
GSMUA_Achr7P17960_001	Banana	cytosol	39.14	36.78
GSMUA_Achr5P14830_001	Banana	cytosol	41.02	35.66
GSMUA_Achr7P01800_001	Banana	cytosol	38.07	35.06
GSMUA_Achr6P00620_001	Banana	cytosol	30.83	34.95
GSMUA_Achr2P17250_001	Banana	cytosol	30.56	34.65
GSMUA_Achr7P08080_001	Banana	cytosol	28.95	34.39
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	40.75	33.78
GSMUA_Achr1P14750_001	Banana	cytosol	37.0	28.87

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	ncoils:Coil
InterPro:Epsilon_tubulin	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr3G23490_001
EnsemblPlants:GSMUA_Achr3P23490_001	EnsemblPlants:GSMUA_Achr3T23490_001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0SH65
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01519	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF245	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00029673AF	SEG:seg	:	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr3G23490_001]

Coordinates

chr3:-:24319443..24323389

Molecular Weight (calculated)

41572.1 Da

IEP (calculated)

4.456

GRAVY (calculated)

-0.359

Length

373 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGAKF WEVICDEHGI DGTGKYSGDS DLQLERINVY YNEASGGRYS GAGNNWAKGH YTEGAELIDS VLDVVRKEAE NCDCLQGFQV
101: CHSLGGGTGS GMGTLLISKI REEYPDRMML TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN ADECMVLDNE ALYDICFRTL KLSNPSFGDL NHLISATMSG
201: VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF FMVGFAPLTS RGSQQYRALT VPELTQQMWD AKNMMCAADP RHGRYLTASA MFRGKMSTKE VDEQMLNVQN
301: KNSSYFVEWI PNNVKSSVCD IPPKGLKMAS TFIGNSTSIQ EINMNDLVAE YQQYQDATAD EEEYEEEEEE LAD

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.