Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44340.1 | CDX73765 | AT3G50960.1 | 18390592 |
| AT5G44340.1 | CDX77968 | AT3G50960.1 | 18390592 |
| AT5G44340.1 | CDY26529 | AT3G50960.1 | 18390592 |
| AT5G44340.1 | CDY57635 | AT3G50960.1 | 18390592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033737.1-P | Field mustard | cytosol | 99.33 | 99.33 |
| CDY49002 | Canola | cytosol | 99.33 | 99.33 |
| CDY60599 | Canola | cytosol | 98.88 | 98.88 |
| CDX96965 | Canola | cytosol | 98.65 | 98.65 |
| CDY14924 | Canola | cytosol | 98.65 | 98.43 |
| CDY13108 | Canola | cytosol | 98.43 | 98.43 |
| AT5G44340.1 | Thale cress | cytosol | 98.2 | 98.42 |
| CDX94014 | Canola | cytosol | 95.28 | 95.07 |
| CDX82788 | Canola | cytosol | 95.28 | 95.07 |
| CDX79013 | Canola | cytosol | 95.28 | 95.07 |
| CDX76444 | Canola | cytosol | 95.06 | 94.84 |
| CDX98679 | Canola | cytosol | 95.06 | 94.84 |
| CDY31428 | Canola | cytosol | 95.06 | 94.84 |
| GSMUA_Achr11P... | Banana | cytosol | 74.38 | 94.57 |
| KRH58404 | Soybean | nucleus | 93.48 | 94.12 |
| KRH11812 | Soybean | nucleus | 94.16 | 93.95 |
| EES04582 | Sorghum | cytosol | 93.93 | 93.72 |
| KRH36829 | Soybean | nucleus | 93.93 | 93.72 |
| GSMUA_Achr8P07060_001 | Banana | cytosol | 81.8 | 93.57 |
| KRH42279 | Soybean | cytosol | 93.03 | 93.45 |
| Zm00001d036626_P001 | Maize | cytosol | 47.64 | 93.39 |
| GSMUA_Achr5P26680_001 | Banana | cytosol | 81.35 | 93.3 |
| GSMUA_Achr3P23490_001 | Banana | cytosol | 78.2 | 93.3 |
| Os06t0671900-01 | Rice | plasma membrane | 93.48 | 93.27 |
| VIT_10s0003g05320.t01 | Wine grape | cytosol | 93.26 | 93.26 |
| CDY31638 | Canola | cytosol | 92.81 | 93.02 |
| Zm00001d013139_P001 | Maize | cytosol | 61.12 | 92.83 |
| GSMUA_Achr2P01410_001 | Banana | cytosol | 81.35 | 92.82 |
| Os03t0780600-01 | Rice | plastid | 92.58 | 92.79 |
| TraesCS5A01G416400.1 | Wheat | cytosol | 92.58 | 92.79 |
| TraesCS6B01G169300.1 | Wheat | cytosol | 92.58 | 92.79 |
| CDY67078 | Canola | cytosol | 82.02 | 92.64 |
| Os02t0167300-01 | Rice | plasma membrane | 93.03 | 92.62 |
| HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 92.81 | 92.6 |
| EER90205 | Sorghum | cytosol | 92.81 | 92.6 |
| TraesCS7A01G466600.1 | Wheat | golgi | 92.81 | 92.6 |
| TraesCS7D01G454200.1 | Wheat | cytosol | 92.81 | 92.6 |
| EER93354 | Sorghum | cytosol | 92.58 | 92.58 |
| TraesCS6D01G130500.2 | Wheat | golgi | 92.58 | 92.58 |
| CDX84283 | Canola | cytosol | 92.58 | 92.38 |
| Zm00001d034022_P001 | Maize | cytosol | 54.38 | 92.37 |
| TraesCS5D01G424100.1 | Wheat | cytosol | 92.36 | 92.36 |
| TraesCS5B01G418700.1 | Wheat | golgi | 92.36 | 92.36 |
| HORVU6Hr1G027620.1 | Barley | plasma membrane | 92.36 | 92.15 |
| Zm00001d015348_P002 | Maize | plastid | 91.91 | 92.12 |
| CDX87664 | Canola | cytosol | 92.13 | 91.72 |
| CDX73198 | Canola | cytosol | 92.13 | 91.72 |
| GSMUA_Achr5P00290_001 | Banana | cytosol | 80.9 | 91.6 |
| CDY53366 | Canola | cytosol | 92.36 | 91.54 |
| Zm00001d046996_P001 | Maize | cytosol | 47.42 | 91.34 |
| CDX84345 | Canola | cytosol | 92.36 | 91.33 |
| CDX86102 | Canola | plasma membrane | 92.36 | 91.33 |
| CDY00319 | Canola | cytosol | 92.36 | 91.33 |
| CDY38073 | Canola | cytosol | 92.36 | 91.33 |
| CDY51360 | Canola | cytosol | 92.13 | 91.31 |
| CDY45452 | Canola | cytosol | 92.13 | 91.31 |
| CDX97877 | Canola | cytosol | 92.13 | 91.31 |
| CDX80390 | Canola | cytosol | 91.69 | 90.87 |
| CDX99087 | Canola | cytosol | 87.19 | 90.87 |
| CDY21784 | Canola | cytosol | 87.19 | 90.87 |
| CDX88051 | Canola | cytosol | 86.52 | 90.38 |
| CDX68422 | Canola | cytosol | 57.53 | 89.2 |
| GSMUA_Achr6P04600_001 | Banana | cytosol | 84.72 | 89.13 |
| CDX69693 | Canola | cytosol | 91.69 | 88.5 |
| CDX97180 | Canola | cytosol | 91.69 | 84.82 |
| GSMUA_Achr6P19990_001 | Banana | cytosol | 76.63 | 82.37 |
| HORVU5Hr1G100900.2 | Barley | cytosol | 92.36 | 81.23 |
| CDY25017 | Canola | cytosol | 40.0 | 43.41 |
| CDY45043 | Canola | cytosol | 42.92 | 42.44 |
| CDY03583 | Canola | cytosol | 42.92 | 42.44 |
| CDY66630 | Canola | cytosol | 41.35 | 42.3 |
| CDY28123 | Canola | cytosol | 42.7 | 42.22 |
| CDY50974 | Canola | cytosol | 42.7 | 42.22 |
| CDY42294 | Canola | cytosol | 42.25 | 41.78 |
| CDY42295 | Canola | cytosol | 42.25 | 41.78 |
| CDY44941 | Canola | cytosol | 42.02 | 41.56 |
| CDY44942 | Canola | cytosol | 42.02 | 41.56 |
| CDX88875 | Canola | cytosol | 41.8 | 41.33 |
| CDX70890 | Canola | cytosol | 41.8 | 41.33 |
| CDY29334 | Canola | cytosol | 40.0 | 41.3 |
| CDX92501 | Canola | cytosol | 41.57 | 41.11 |
| CDX92502 | Canola | cytosol | 41.57 | 41.11 |
| CDY35856 | Canola | cytosol | 11.91 | 35.57 |
| CDY11370 | Canola | cytosol | 36.18 | 34.04 |
| CDX71723 | Canola | cytosol | 36.18 | 34.04 |
| CDY46272 | Canola | cytosol | 19.55 | 30.1 |
| CDY05559 | Canola | mitochondrion | 29.66 | 26.24 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | GO:A0A078JUF1 | UniProt:A0A078JUF1 |
| InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | EnsemblPlants:CDY69221 | ProteinID:CDY69221 | ProteinID:CDY69221.1 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00084227001 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 |
| PFAM:PF00091 | PFAM:PF03953 | PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 |
| PANTHER:PTHR11588 | PANTHER:PTHR11588:SF245 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 |
| InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C |
| InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0004EDC1B9 | SEG:seg | : | : |
Description
BnaCnng62490DTubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A078JUF1]
Coordinates
chrLK038897:-:894..2734
Molecular Weight (calculated)
49895.9 Da
IEP (calculated)
4.456
GRAVY (calculated)
-0.361
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFHTLKLSNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEDEEE EYDEA
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFHTLKLSNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEDEEE EYDEA
001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET
Arabidopsis Description
TUBB4Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P24636]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.