CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84345
CDX86102
CDX96965
CDX99087
CDY00319
CDY13108
CDY14924
CDY21784
CDY38073
CDY49002
CDY60599
CDY69221

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	CDX96965	AT5G44340.1	18390592
AT3G50960.1	CDY13108	AT5G44340.1	18390592
AT3G50960.1	CDY14924	AT5G44340.1	18390592
AT3G50960.1	CDY49002	AT5G44340.1	18390592
AT3G50960.1	CDY60599	AT5G44340.1	18390592
AT3G50960.1	CDY69221	AT5G44340.1	18390592
AT3G50960.1	CDX84345	AT5G62700.1	18390592
AT3G50960.1	CDX86102	AT5G62700.1	18390592
AT3G50960.1	CDX99087	AT5G62700.1	18390592
AT3G50960.1	CDY00319	AT5G62700.1	18390592
AT3G50960.1	CDY21784	AT5G62700.1	18390592
AT3G50960.1	CDY38073	AT5G62700.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57635	Canola	cytosol	97.83	97.83
CDX73765	Canola	cytosol	96.96	96.96
CDX77968	Canola	cytosol	96.52	96.52
AT3G50960.1	Thale cress	cytosol	94.35	94.35
Solyc02g062540.2.1	Tomato	cytosol	78.26	78.95
KRH69862	Soybean	cytosol	77.83	77.49
Os11t0604700-00	Rice	cytosol	77.39	77.39
PGSC0003DMT400040052	Potato	cytosol	76.52	77.19
KRH17436	Soybean	cytosol, extracellular	77.39	77.06
Os05t0255600-01	Rice	cytosol	76.96	76.96
Zm00001d007600_P001	Maize	cytosol	76.52	76.86
VIT_04s0023g02390.t01	Wine grape	cytosol	76.52	76.52
EES08806	Sorghum	cytosol	75.65	75.98
Zm00001d048892_P001	Maize	extracellular	74.78	75.11
TraesCS7B01G044100.1	Wheat	cytosol	74.78	74.78
GSMUA_Achr2P14840_001	Banana	cytosol	66.96	73.68
VIT_14s0036g00970.t01	Wine grape	plasma membrane	76.96	72.54
HORVU7Hr1G029120.1	Barley	golgi	33.91	69.64
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	31.74	64.6
Zm00001d025839_P001	Maize	cytosol	35.65	48.81
Zm00001d033260_P001	Maize	plastid	32.61	48.7
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	26.52	43.88
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	26.52	43.88
CDX69045	Canola	cytosol	34.78	38.1
CDX75419	Canola	nucleus	34.35	37.62
CDX72474	Canola	cytosol	17.39	36.04
CDX72476	Canola	cytosol	16.96	35.45
CDY49291	Canola	mitochondrion	11.3	28.26

Protein Annotations

EnsemblPlants:CDY26529	EnsemblPlantsGene:GSBRNA2T00035378001	Gene3D:3.40.30.10	GO:A0A078GMU7	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	PFAM:PF00085	ProteinID:CDY26529	ProteinID:CDY26529.1
SEG:seg	SUPFAM:SSF52833	UniParc:UPI0004EE73F1	UniProt:A0A078GMU7	MapMan:20.1.2.3	:

Description

BnaC01g23700DBnaC01g23700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMU7]

Coordinates

chrLK032191:-:444840..446493

Molecular Weight (calculated)

26256.1 Da

IEP (calculated)

5.694

GRAVY (calculated)

-0.661

Length

230 amino acids

Sequence
(BLAST)

001: MDPDAVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQSSN HVNEEVDLDE LMDDPELEKL HADRIAALKR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKVDA ENAPFFVTKL AIKTLPCVLL FSKGIAIDRL VGFQDLGTKD DFSTTKLENV LIKKGMLSKK
201: KKEEDDEDAE YQESIRRSVR SSENLDSDSD

Best Arabidopsis Sequence Match ( AT3G50960.1 )
(BLAST)

001: MDPDAVKSTL SNLAFGNVMA AAARNYQKEV LANEKAQGSN PVNEEVDLDE LMDDPELERL HADRIAALKR EVEKRESFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKVDA ENAPFFVTKL AIKTLPCVVL FSKGVAMDRL VGFQDLGTKD DFTTNKLENV LLKKGMLSKK
201: KKEEDDEDAE YQESIRRSVR SSENLDSDSD

Arabidopsis Description

PLP3AThioredoxin domain-containing protein PLP3A [Source:UniProtKB/Swiss-Prot;Acc:Q6NPL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.