Factsheet for Zm00001d048892_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008216_P002
Zm00001d013139_P001
Zm00001d015348_P002
Zm00001d034022_P001
Zm00001d036626_P001
Zm00001d040509_P001
Zm00001d046996_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	Zm00001d013139_P001	AT5G44340.1	18390592
AT3G50960.1	Zm00001d015348_P002	AT5G44340.1	18390592
AT3G50960.1	Zm00001d034022_P001	AT5G44340.1	18390592
AT3G50960.1	Zm00001d036626_P001	AT5G44340.1	18390592
AT3G50960.1	Zm00001d046996_P001	AT5G44340.1	18390592
AT3G50960.1	Zm00001d008216_P002	AT5G62690.1	18390592
AT3G50960.1	Zm00001d040509_P001	AT5G62690.1	18390592
AT3G50960.1	Zm00001d008216_P002	AT5G62700.1	18390592
AT3G50960.1	Zm00001d040509_P001	AT5G62700.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08806	Sorghum	cytosol	96.07	96.07
Zm00001d007600_P001	Maize	cytosol	94.76	94.76
Os05t0255600-01	Rice	cytosol	89.52	89.13
Os11t0604700-00	Rice	cytosol	89.52	89.13
HORVU7Hr1G029120.1	Barley	golgi	42.36	86.61
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	42.36	85.84
TraesCS7B01G044100.1	Wheat	cytosol	85.59	85.22
GSMUA_Achr2P14840_001	Banana	cytosol	70.31	77.03
Solyc02g062540.2.1	Tomato	cytosol	76.42	76.75
PGSC0003DMT400040052	Potato	cytosol	75.55	75.88
Bra036844.1-P	Field mustard	cytosol	75.55	75.22
CDX77968	Canola	cytosol	75.55	75.22
CDY26529	Canola	cytosol	75.11	74.78
CDX73765	Canola	cytosol	74.67	74.35
AT5G66410.1	Thale cress	cytosol	74.24	73.91
KRH69862	Soybean	cytosol	74.24	73.59
CDY57635	Canola	cytosol	73.8	73.48
VIT_04s0023g02390.t01	Wine grape	cytosol	73.8	73.48
AT3G50960.1	Thale cress	cytosol	73.8	73.48
KRH17436	Soybean	cytosol, extracellular	72.93	72.29
Bra038875.1-P	Field mustard	nucleus	69.43	71.62
VIT_14s0036g00970.t01	Wine grape	plasma membrane	73.8	69.26
Zm00001d033260_P001	Maize	plastid	45.85	68.18
Zm00001d025839_P001	Maize	cytosol	47.16	64.29
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	35.37	58.27
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	35.37	58.27
Zm00001d050225_P001	Maize	cytosol	31.44	33.96

Protein Annotations

EntrezGene:100273012	MapMan:20.1.2.3	Gene3D:3.40.30.10	ProteinID:AQK49159.1	UniProt:B4FSA2	EMBL:BT039990
EMBL:EU964519	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00017B8179	EnsemblPlantsGene:Zm00001d048892	EnsemblPlants:Zm00001d048892_P001	EnsemblPlants:Zm00001d048892_T001
SEG:seg	:	:	:	:	:

Description

Thioredoxin domain-containing protein PLP3B

Coordinates

chr4:-:7220930..7224183

Molecular Weight (calculated)

25822.6 Da

IEP (calculated)

5.283

GRAVY (calculated)

-0.598

Length

229 amino acids

Sequence
(BLAST)

001: MDPDSVKSTL SNLAFGNVIA AAARDLQKEM VAKDKAQSAP ASHDEVDLDE LLDDPELEKL HAERIAALKK EVEKREVLKR QGHGEYREIT EGDFLGEVTG
101: SEKVICHFYH REFYRCKIMD KHLKALAPVY VGTKFVKLDA ENAPFFVAKL AIKTLPCVIL FKKGIAVDRL VGFQDLRSKD DFPTRALENI LKTKGIIDEK
201: KKDDDDDDEE SEAKNRRVRS STAQDSDSD

Best Arabidopsis Sequence Match ( AT5G66410.1 )
(BLAST)

001: MDPDTVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQGSR PVNEEVDLDE LMDDPELEKL HADRIAALRR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKMDA ENAPFFVTKL AIKTLPCVIL FSKGIAMDRL VGFQDLGAKD DFSTTKLENL LVKKGMLSEK
201: RKEEDEEDYE YQESIRRSVR SSANVDSDSD

Arabidopsis Description

PLP3BPLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.