Factsheet for Bra038875.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010114.1-P
Bra018184.1-P
Bra019493.1-P
Bra027544.1-P
Bra033737.1-P
Bra033796.1-P
Bra039506.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	Bra027544.1-P	AT5G44340.1	18390592
AT3G50960.1	Bra033737.1-P	AT5G44340.1	18390592
AT3G50960.1	Bra039506.1-P	AT5G44340.1	18390592
AT3G50960.1	Bra019493.1-P	AT5G62690.1	18390592
AT3G50960.1	Bra010114.1-P	AT5G62700.1	18390592
AT3G50960.1	Bra018184.1-P	AT5G62700.1	18390592
AT3G50960.1	Bra033796.1-P	AT5G62700.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57635	Canola	cytosol	98.2	94.78
Bra036844.1-P	Field mustard	cytosol	94.14	90.87
AT3G50960.1	Thale cress	cytosol	91.44	88.26
Solyc02g062540.2.1	Tomato	cytosol	74.77	72.81
Os11t0604700-00	Rice	cytosol	74.77	72.17
Zm00001d007600_P001	Maize	cytosol	73.42	71.18
PGSC0003DMT400040052	Potato	cytosol	72.97	71.05
KRH69862	Soybean	cytosol	73.87	71.0
Os05t0255600-01	Rice	cytosol	73.42	70.87
KRH17436	Soybean	cytosol, extracellular	73.42	70.56
VIT_04s0023g02390.t01	Wine grape	cytosol	72.97	70.43
EES08806	Sorghum	cytosol	72.52	70.31
Zm00001d048892_P001	Maize	extracellular	71.62	69.43
TraesCS7B01G044100.1	Wheat	cytosol	71.62	69.13
HORVU7Hr1G029120.1	Barley	golgi	34.68	68.75
GSMUA_Achr2P14840_001	Banana	cytosol	63.96	67.94
VIT_14s0036g00970.t01	Wine grape	plasma membrane	73.42	66.8
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	32.43	63.72
Zm00001d025839_P001	Maize	cytosol	36.94	48.81
Zm00001d033260_P001	Maize	plastid	33.33	48.05
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	26.58	42.45
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	26.58	42.45
Bra011517.1-P	Field mustard	cytosol	34.23	36.19
Bra017642.1-P	Field mustard	endoplasmic reticulum	22.97	31.68

Protein Annotations

EnsemblPlants:Bra038875.1	EnsemblPlants:Bra038875.1-P	EnsemblPlantsGene:Bra038875	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	PFAM:PF00085	SEG:seg	SUPFAM:SSF52833
UniParc:UPI00025453CB	UniProt:M4FCQ6	MapMan:20.1.2.3	:	:	:

Description

AT3G50960 (E=1e-073) PLP3a | PLP3a (Phosducin-like protein 3 homolog); beta-tubulin binding

Coordinates

chrA01:+:12858147..12859475

Molecular Weight (calculated)

25261.9 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.684

Length

222 amino acids

Sequence
(BLAST)

001: MDPDAVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQSSN HVNEEADLDE LMDNDRIAAL KREVEKREAF KRQGHGEYRE VSEGDFLGEV TRSEKVISHF
101: YHKECYRCKI MDKHLKTLAP RHVDTKFIKV DAENAPFFVT KLAIKTLPCV LLFSKGIAID RLVGFQDLGT KDDFSTTKLE NVLIKKGMLS KKKKEQDDED
201: AEYQESIRRS VRSSENLDSD SE

Best Arabidopsis Sequence Match ( AT3G50960.1 )
(BLAST)

001: MDPDAVKSTL SNLAFGNVMA AAARNYQKEV LANEKAQGSN PVNEEVDLDE LMDDPELERL HADRIAALKR EVEKRESFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKVDA ENAPFFVTKL AIKTLPCVVL FSKGVAMDRL VGFQDLGTKD DFTTNKLENV LLKKGMLSKK
201: KKEEDDEDAE YQESIRRSVR SSENLDSDSD

Arabidopsis Description

PLP3AThioredoxin domain-containing protein PLP3A [Source:UniProtKB/Swiss-Prot;Acc:Q6NPL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.