Factsheet for Bra033796.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra036844.1-P
Bra038875.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62700.1	Bra036844.1-P	AT3G50960.1	18390592
AT5G62700.1	Bra038875.1-P	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018184.1-P	Field mustard	cytosol	99.33	99.33
CDY38073	Canola	cytosol	99.33	99.11
Bra010114.1-P	Field mustard	cytosol	99.33	99.11
Bra019493.1-P	Field mustard	cytosol	99.33	99.11
AT5G62700.1	Thale cress	cytosol	99.11	98.89
EER95686	Sorghum	cytosol	96.44	97.09
Bra018379.1-P	Field mustard	cytosol	96.21	96.21
TraesCS5A01G534300.1	Wheat	cytosol	95.77	96.2
Os03t0105600-01	Rice	plasma membrane	95.77	96.2
TraesCSU01G137900.1	Wheat	cytosol	95.77	95.98
PGSC0003DMT400028800	Potato	cytosol	95.55	95.97
Zm00001d040509_P001	Maize	cytosol	47.44	95.95
Bra039987.1-P	Field mustard	cytosol	95.77	95.77
VIT_08s0007g01630.t01	Wine grape	cytosol	95.32	95.75
TraesCS4B01G366500.1	Wheat	cytosol	95.55	95.55
Bra009710.1-P	Field mustard	cytosol	95.32	95.32
PGSC0003DMT400049212	Potato	cytosol	95.1	95.31
Solyc10g086760.1.1	Tomato	nucleus	95.1	95.31
Solyc10g085020.1.1	Tomato	nucleus	95.99	94.93
Bra008903.1-P	Field mustard	cytosol	94.43	94.64
Bra015815.1-P	Field mustard	cytosol	92.87	93.29
Bra020912.1-P	Field mustard	cytosol	92.43	93.05
Bra038795.1-P	Field mustard	cytosol	91.54	92.36
Bra027544.1-P	Field mustard	cytosol	91.09	91.91
Bra039506.1-P	Field mustard	cytosol	91.09	91.7
Bra033737.1-P	Field mustard	cytosol	90.87	91.69
Bra013481.1-P	Field mustard	cytosol	90.65	91.26
Zm00001d008216_P002	Maize	cytosol	48.55	91.21
Bra005395.1-P	Field mustard	cytosol	77.95	86.85
Bra039648.1-P	Field mustard	cytosol	42.76	42.67
Bra014232.1-P	Field mustard	cytosol	42.76	42.67
Bra018825.1-P	Field mustard	cytosol	42.54	42.44
Bra020062.1-P	Field mustard	cytosol	42.09	42.0
Bra020061.1-P	Field mustard	cytosol	41.87	41.78
Bra006517.1-P	Field mustard	cytosol	41.87	41.78
Bra002261.1-P	Field mustard	cytosol	41.87	41.78
Bra002260.1-P	Field mustard	cytosol	37.19	40.73
Bra007622.1-P	Field mustard	cytosol	35.19	33.4
Bra020572.1-P	Field mustard	cytosol	29.62	28.42

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
EnsemblPlantsGene:Bra033796	EnsemblPlants:Bra033796.1	EnsemblPlants:Bra033796.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M4EYA4	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF259
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0002543B9C	SEG:seg	:	:	:	:

Description

AT5G62690 (E=4e-247) TUB2 | TUB2; GTP binding / GTPase/ structural molecule

Coordinates

chrA01:-:14093922..14095407

Molecular Weight (calculated)

50601.7 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.428

Length

449 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLPSRGSQQ YRSPTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEE EGEYQQEEY

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.