Factsheet for Bra002260.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002261.1-P	Field mustard	cytosol	98.78	90.0
CDX92501	Canola	cytosol	98.78	90.0
AT5G19780.1	Thale cress	cytosol	98.29	89.56
AT5G19770.1	Thale cress	cytosol	98.29	89.56
Bra020062.1-P	Field mustard	cytosol	98.29	89.56
Bra006517.1-P	Field mustard	cytosol	97.07	88.44
Bra020061.1-P	Field mustard	cytosol	96.59	88.0
KRH58942	Soybean	nucleus	95.85	87.53
KRH42841	Soybean	cytosol, nucleus	95.61	87.11
HORVU2Hr1G037560.2	Barley	cytosol	75.12	84.38
TraesCS4B01G243100.1	Wheat	cytosol	90.73	82.85
TraesCS4D01G242700.1	Wheat	cytosol	90.73	82.85
Bra014232.1-P	Field mustard	cytosol	90.73	82.67
TraesCS4A01G065700.1	Wheat	cytosol	90.49	82.63
HORVU4Hr1G067370.1	Barley	cytosol	90.24	82.41
Bra018825.1-P	Field mustard	cytosol	90.24	82.22
Bra039648.1-P	Field mustard	cytosol	90.24	82.22
EER92631	Sorghum	cytosol	89.76	82.14
Zm00001d048065_P002	Maize	cytosol, mitochondrion	89.27	81.7
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	89.02	81.29
VIT_08s0007g07260.t01	Wine grape	cytosol	87.32	80.27
Bra020572.1-P	Field mustard	cytosol	57.32	50.21
Bra027544.1-P	Field mustard	cytosol	40.98	37.75
Bra039506.1-P	Field mustard	cytosol	40.98	37.67
Bra008903.1-P	Field mustard	cytosol	40.98	37.5
Bra020912.1-P	Field mustard	cytosol	40.73	37.44
Bra018184.1-P	Field mustard	cytosol	40.98	37.42
Bra039987.1-P	Field mustard	cytosol	40.98	37.42
Bra019493.1-P	Field mustard	cytosol	40.98	37.33
Bra010114.1-P	Field mustard	cytosol	40.98	37.33
Bra018379.1-P	Field mustard	cytosol	40.73	37.19
Bra033796.1-P	Field mustard	cytosol	40.73	37.19
Bra015815.1-P	Field mustard	cytosol	40.49	37.14
Bra038795.1-P	Field mustard	cytosol	40.24	37.08
Bra013481.1-P	Field mustard	cytosol	40.24	37.0
Bra033737.1-P	Field mustard	cytosol	40.0	36.85
Bra009710.1-P	Field mustard	cytosol	40.24	36.75
Bra005395.1-P	Field mustard	cytosol	35.61	36.23
Bra007622.1-P	Field mustard	cytosol	28.78	24.95
Os03t0780800-01	Rice	cytosol	0.73	1.27

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS
EnsemblPlantsGene:Bra002260	EnsemblPlants:Bra002260.1	EnsemblPlants:Bra002260.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	UniProt:M4CDH9	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002544FAA	SEG:seg	:

Description

AT5G19770 (E=3e-139) TUA3 | TUA3; structural constituent of cytoskeleton

Coordinates

chrA10:+:10618880..10620459

Molecular Weight (calculated)

45464.8 Da

IEP (calculated)

4.609

GRAVY (calculated)

-0.166

Length

410 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GCACVSVSTA VVEPYNSVLS THSLLEHTDV AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT
201: SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSIPE ITNAVFEPAS MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT
301: VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG
401: DDEDDEGEDY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.