Factsheet for Bra015815.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87664	Canola	cytosol	100.0	100.0
CDX73198	Canola	cytosol	100.0	100.0
AT1G75780.1	Thale cress	cytosol	98.66	98.66
VIT_18s0001g14360.t01	Wine grape	cytosol	96.2	95.98
PGSC0003DMT400025739	Potato	cytosol	95.53	94.68
Solyc04g081490.2.1	Tomato	nucleus	95.3	94.46
KRH51701	Soybean	nucleus	94.18	93.97
Bra018379.1-P	Field mustard	cytosol	94.18	93.76
KRH61035	Soybean	nucleus	93.74	93.32
KRH05958	Soybean	nucleus	93.74	93.32
Bra039987.1-P	Field mustard	cytosol	93.74	93.32
Bra010114.1-P	Field mustard	cytosol	93.74	93.11
Bra019493.1-P	Field mustard	cytosol	93.74	93.11
Bra018184.1-P	Field mustard	cytosol	93.51	93.1
Bra033796.1-P	Field mustard	cytosol	93.29	92.87
Bra020912.1-P	Field mustard	cytosol	92.62	92.83
Bra008903.1-P	Field mustard	cytosol	92.84	92.63
Solyc12g089310.1.1	Tomato	nucleus	93.06	92.24
Bra038795.1-P	Field mustard	cytosol	91.72	92.13
Bra033737.1-P	Field mustard	cytosol	91.5	91.91
KRH17435	Soybean	nucleus	93.96	91.9
PGSC0003DMT400075425	Potato	cytosol	92.62	91.8
Bra009710.1-P	Field mustard	cytosol	92.17	91.76
Bra027544.1-P	Field mustard	cytosol	91.28	91.69
Bra039506.1-P	Field mustard	cytosol	91.28	91.48
Bra013481.1-P	Field mustard	cytosol	90.83	91.03
Bra005395.1-P	Field mustard	cytosol	78.97	87.59
Bra039648.1-P	Field mustard	cytosol	42.51	42.22
Bra014232.1-P	Field mustard	cytosol	42.51	42.22
Bra018825.1-P	Field mustard	cytosol	42.28	42.0
Bra020062.1-P	Field mustard	cytosol	42.06	41.78
Bra006517.1-P	Field mustard	cytosol	42.06	41.78
Bra020061.1-P	Field mustard	cytosol	42.06	41.78
Bra002261.1-P	Field mustard	cytosol	41.83	41.56
Bra002260.1-P	Field mustard	cytosol	37.14	40.49
Bra007622.1-P	Field mustard	cytosol	35.57	33.62
Bra020572.1-P	Field mustard	cytosol	30.2	28.85

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
EnsemblPlantsGene:Bra015815	EnsemblPlants:Bra015815.1	EnsemblPlants:Bra015815.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009416	GO:GO:0009628
GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787
GO:GO:0040007	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M4DH38	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF116	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002541FE6	SEG:seg	:	:	:

Description

AT1G75780 (E=1e-247) TUB1 | TUB1; GTP binding / GTPase/ structural molecule

Coordinates

chrA07:-:20713820..20716404

Molecular Weight (calculated)

50161.1 Da

IEP (calculated)

4.425

GRAVY (calculated)

-0.368

Length

447 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT AEEEGEYEDE EEEVYES

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.