Factsheet for Bra020062.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44941	Canola	cytosol	99.78	99.78
CDY44942	Canola	cytosol	99.78	99.78
AT5G19780.1	Thale cress	cytosol	99.56	99.56
Bra002261.1-P	Field mustard	cytosol	99.56	99.56
AT5G19770.1	Thale cress	cytosol	99.56	99.56
Bra006517.1-P	Field mustard	cytosol	98.44	98.44
Bra020061.1-P	Field mustard	cytosol	98.44	98.44
Bra002260.1-P	Field mustard	cytosol	89.56	98.29
KRH58942	Soybean	nucleus	97.33	97.55
KRH42841	Soybean	cytosol, nucleus	97.11	97.11
HORVU2Hr1G037560.2	Barley	cytosol	78.44	96.71
TraesCS4B01G243100.1	Wheat	cytosol	92.44	92.65
TraesCS4D01G242700.1	Wheat	cytosol	92.44	92.65
Bra014232.1-P	Field mustard	cytosol	92.44	92.44
TraesCS4A01G065700.1	Wheat	cytosol	92.22	92.43
EER92631	Sorghum	cytosol	92.0	92.41
HORVU4Hr1G067370.1	Barley	cytosol	92.0	92.2
Bra018825.1-P	Field mustard	cytosol	92.0	92.0
Bra039648.1-P	Field mustard	cytosol	92.0	92.0
Zm00001d048065_P002	Maize	cytosol, mitochondrion	91.56	91.96
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	91.33	91.54
VIT_08s0007g07260.t01	Wine grape	cytosol	89.11	89.91
Bra020572.1-P	Field mustard	cytosol	62.0	59.62
Bra027544.1-P	Field mustard	cytosol	42.22	42.7
Bra008903.1-P	Field mustard	cytosol	42.44	42.63
Bra039506.1-P	Field mustard	cytosol	42.22	42.6
Bra039987.1-P	Field mustard	cytosol	42.44	42.54
Bra018379.1-P	Field mustard	cytosol	42.22	42.32
Bra018184.1-P	Field mustard	cytosol	42.22	42.32
Bra019493.1-P	Field mustard	cytosol	42.22	42.22
Bra010114.1-P	Field mustard	cytosol	42.22	42.22
Bra033796.1-P	Field mustard	cytosol	42.0	42.09
Bra015815.1-P	Field mustard	cytosol	41.78	42.06
Bra020912.1-P	Field mustard	cytosol	41.56	41.93
Bra009710.1-P	Field mustard	cytosol	41.78	41.87
Bra033737.1-P	Field mustard	cytosol	41.33	41.8
Bra038795.1-P	Field mustard	cytosol	41.11	41.57
Bra013481.1-P	Field mustard	cytosol	41.11	41.48
Bra005395.1-P	Field mustard	cytosol	37.11	41.44
Bra007622.1-P	Field mustard	cytosol	30.44	28.96
Os03t0780800-01	Rice	cytosol	0.67	1.27

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS
EnsemblPlantsGene:Bra020062	EnsemblPlants:Bra020062.1	EnsemblPlants:Bra020062.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	UniProt:M4DU69	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00025432E8
SEG:seg	:	:	:	:	:

Description

AT5G19770 (E=6e-236) TUA3 | TUA3; structural constituent of cytoskeleton

Coordinates

chrA02:+:4872660..4876349

Molecular Weight (calculated)

49685.0 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.153

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSIPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEEY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.