Factsheet for Bra018825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G14960.2	Thale cress	cytosol	99.78	99.78
CDY28123	Canola	cytosol	99.78	99.78
CDY50974	Canola	cytosol	99.78	99.78
CDY29334	Canola	cytosol	95.33	99.54
Bra014232.1-P	Field mustard	cytosol	99.33	99.33
Bra039648.1-P	Field mustard	cytosol	99.11	99.11
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	96.22	96.22
KRH35640	Soybean	cytosol, nucleus	96.0	96.21
Solyc08g006890.2.1	Tomato	cytosol	96.22	96.01
PGSC0003DMT400022574	Potato	cytosol	96.0	96.0
KRG91143	Soybean	nucleus	95.78	95.99
Solyc02g087880.2.1	Tomato	cytosol, unclear	95.56	95.56
PGSC0003DMT400003336	Potato	cytosol	95.56	95.56
PGSC0003DMT400030110	Potato	cytosol	95.11	94.9
Bra020062.1-P	Field mustard	cytosol	92.0	92.0
Bra002261.1-P	Field mustard	cytosol	92.0	92.0
Bra006517.1-P	Field mustard	cytosol	90.89	90.89
Bra020061.1-P	Field mustard	cytosol	90.44	90.44
Bra002260.1-P	Field mustard	cytosol	82.22	90.24
PGSC0003DMT400085117	Potato	cytosol	56.67	88.85
Bra020572.1-P	Field mustard	cytosol	66.67	64.1
Bra027544.1-P	Field mustard	cytosol	42.44	42.92
Bra039506.1-P	Field mustard	cytosol	42.44	42.83
Bra039987.1-P	Field mustard	cytosol	42.67	42.76
Bra018184.1-P	Field mustard	cytosol	42.67	42.76
Bra019493.1-P	Field mustard	cytosol	42.67	42.67
Bra010114.1-P	Field mustard	cytosol	42.67	42.67
Bra020912.1-P	Field mustard	cytosol	42.22	42.6
Bra033796.1-P	Field mustard	cytosol	42.44	42.54
Bra018379.1-P	Field mustard	cytosol	42.44	42.54
Bra033737.1-P	Field mustard	cytosol	42.0	42.47
Bra008903.1-P	Field mustard	cytosol	42.22	42.41
Bra015815.1-P	Field mustard	cytosol	42.0	42.28
Bra038795.1-P	Field mustard	cytosol	41.78	42.25
Bra013481.1-P	Field mustard	cytosol	41.78	42.15
Bra009710.1-P	Field mustard	cytosol	42.0	42.09
Bra005395.1-P	Field mustard	cytosol	37.11	41.44
Bra007622.1-P	Field mustard	cytosol	30.89	29.39

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	EnsemblPlantsGene:Bra018825
EnsemblPlants:Bra018825.1	EnsemblPlants:Bra018825.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0000226	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005773	GO:GO:0005829	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886
GO:GO:0006950	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009506	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0030312
GO:GO:0045298	GO:GO:0071258	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M4DQN2
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000253EB65	SEG:seg	:	:	:

Description

AT4G14960 (E=1e-244) TUA6 | TUA6; structural constituent of cytoskeleton

Coordinates

chrA06:-:1751053..1753296

Molecular Weight (calculated)

49512.5 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.205

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLA PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.