Factsheet for Solyc04g077020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006890.2.1	Tomato	cytosol	98.0	97.78
CDY66630	Canola	cytosol	94.0	97.24
PGSC0003DMT400030110	Potato	cytosol	97.33	97.12
Solyc02g087880.2.1	Tomato	cytosol, unclear	97.11	97.11
KRH35640	Soybean	cytosol, nucleus	96.67	96.88
KRG91143	Soybean	nucleus	96.44	96.66
AT4G14960.2	Thale cress	cytosol	96.44	96.44
CDY28123	Canola	cytosol	96.44	96.44
CDY50974	Canola	cytosol	96.44	96.44
CDY29334	Canola	cytosol	92.22	96.29
CDY45043	Canola	cytosol	96.22	96.22
AT1G04820.1	Thale cress	cytosol	96.22	96.22
CDY03583	Canola	cytosol	96.22	96.22
Bra018825.1-P	Field mustard	cytosol	96.22	96.22
Bra014232.1-P	Field mustard	cytosol	96.22	96.22
AT1G50010.1	Thale cress	cytosol	96.22	96.22
CDY25017	Canola	cytosol	87.33	95.85
Bra039648.1-P	Field mustard	cytosol	95.78	95.78
Solyc12g088180.1.1	Tomato	cytosol	47.56	94.27
PGSC0003DMT400085117	Potato	cytosol	59.78	93.73
Solyc02g091870.2.1	Tomato	cytosol, unclear	93.78	93.57
Solyc12g089310.1.1	Tomato	nucleus	43.33	43.24
Solyc03g025730.2.1	Tomato	nucleus	42.67	43.15
Solyc10g080940.1.1	Tomato	nucleus	43.33	43.14
Solyc06g035970.2.1	Tomato	nucleus	42.67	42.95
Solyc06g076640.2.1	Tomato	nucleus	42.67	42.48
Solyc03g118760.2.1	Tomato	nucleus	41.78	42.44
Solyc04g081490.2.1	Tomato	nucleus	42.44	42.35
Solyc10g086760.1.1	Tomato	nucleus	42.0	42.19
Solyc10g085020.1.1	Tomato	nucleus	42.22	41.85
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	43.11	40.59
Solyc03g111380.2.1	Tomato	cytosol	30.22	28.69

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:K4BUD9
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:Solyc04g077020.2
EnsemblPlants:Solyc04g077020.2.1	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000276624D	SEG:seg	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:K4BUD9]

Coordinates

chr4:+:61990511..61993338

Molecular Weight (calculated)

49774.9 Da

IEP (calculated)

4.694

GRAVY (calculated)

-0.192

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AILLDNEAIY DICRRSLDIE RPTYTNLNRL ISQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMVKCDPRHG KYMACCLMFR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAELE EGEDDDHEEY

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.