Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- golgi 3
- mitochondrion 1
- nucleus 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1322g00010.t01 | Wine grape | cytosol | 93.83 | 77.45 |
| CDY46272 | Canola | cytosol | 83.7 | 65.74 |
| Solyc04g077020.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 94.27 | 47.56 |
| Solyc08g006890.2.1 | Tomato | cytosol | 94.27 | 47.45 |
| HORVU1Hr1G081280.1 | Barley | cytosol | 93.83 | 47.23 |
| KXG37669 | Sorghum | cytosol | 93.83 | 47.23 |
| TraesCS4B01G056700.1 | Wheat | cytosol | 93.39 | 47.01 |
| TraesCS4D01G057000.1 | Wheat | cytosol | 93.39 | 47.01 |
| Zm00001d013367_P001 | Maize | plastid | 93.39 | 47.01 |
| TraesCS4A01G257800.1 | Wheat | cytosol | 93.39 | 47.01 |
| TraesCS1D01G353100.5 | Wheat | cytosol | 93.39 | 47.01 |
| KXG37668 | Sorghum | cytosol | 93.39 | 47.01 |
| HORVU4Hr1G009520.1 | Barley | cytosol, plasma membrane | 93.39 | 47.01 |
| TraesCS1B01G364500.3 | Wheat | cytosol | 93.39 | 47.01 |
| TraesCS1A01G350200.1 | Wheat | golgi | 93.39 | 47.01 |
| Solyc02g087880.2.1 | Tomato | cytosol, unclear | 92.95 | 46.89 |
| Zm00001d033850_P003 | Maize | cytosol | 92.95 | 46.78 |
| Os11t0247300-01 | Rice | plasma membrane | 92.95 | 46.78 |
| Solyc02g091870.2.1 | Tomato | cytosol, unclear | 88.99 | 44.79 |
| GSMUA_Achr7P17960_001 | Banana | cytosol | 69.6 | 39.8 |
| Bra020572.1-P | Field mustard | cytosol | 71.81 | 34.83 |
| CDY05559 | Canola | mitochondrion | 71.81 | 32.41 |
| Solyc12g089310.1.1 | Tomato | nucleus | 37.0 | 18.63 |
| Solyc04g081490.2.1 | Tomato | nucleus | 36.12 | 18.18 |
| Solyc03g025730.2.1 | Tomato | nucleus | 35.24 | 17.98 |
| Solyc06g035970.2.1 | Tomato | nucleus | 35.24 | 17.9 |
| Solyc10g086760.1.1 | Tomato | nucleus | 35.24 | 17.86 |
| Solyc10g085020.1.1 | Tomato | nucleus | 35.68 | 17.84 |
| Solyc03g118760.2.1 | Tomato | nucleus | 34.8 | 17.83 |
| Solyc06g076640.2.1 | Tomato | nucleus | 35.24 | 17.7 |
| Solyc10g080940.1.1 | Tomato | nucleus | 34.36 | 17.26 |
| Solyc06g005910.2.1 | Tomato | cytosol, nucleus, unclear | 35.68 | 16.95 |
| Solyc03g111380.2.1 | Tomato | cytosol | 22.47 | 10.76 |
Protein Annotations
| Gene3D:1.10.287.600 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | MapMan:35.1 | InterPro:Alpha_tubulin | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | UniProt:K4DGN9 | PFAM:PF03953 |
| PRINTS:PR01162 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF254 | SMART:SM00865 | SUPFAM:SSF55307 | EnsemblPlantsGene:Solyc12g088180.1 |
| EnsemblPlants:Solyc12g088180.1.1 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf |
| InterPro:Tubulin_C | UniParc:UPI000276A9C3 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:+:63626388..63627071
Molecular Weight (calculated)
25207.9 Da
IEP (calculated)
4.423
GRAVY (calculated)
-0.143
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MVISVLTTQV ISSLTASLRF DGALNVDVNE FQTNLVPYPR IHFMLSSYAP VISAEKAYHE QLSVAEITNS AFEPSSMMVK CDPRHGKYMA CCLMFRGDVV
101: PKDVNAAVAT IKTKRTIQFV DWCPTGFKCG INYQPPTVVP GGDLAKVQKA VCMISNSTSV AEVFSRIDHK FDLMYAKRAF VHWYVGEGME EGEFSEARED
201: LAALEKDYEE VGAELEDEDG GDEGDEY
101: PKDVNAAVAT IKTKRTIQFV DWCPTGFKCG INYQPPTVVP GGDLAKVQKA VCMISNSTSV AEVFSRIDHK FDLMYAKRAF VHWYVGEGME EGEFSEARED
201: LAALEKDYEE VGAELEDEDG GDEGDEY
001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY
Arabidopsis Description
TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.