CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35856	Canola	cytosol	48.1	93.29
Solyc12g088180.1.1	Tomato	cytosol	65.74	83.7
VIT_00s1322g00010.t01	Wine grape	cytosol	66.78	70.18
CDY29334	Canola	cytosol	74.05	49.65
CDY03583	Canola	cytosol	74.39	47.78
CDY28123	Canola	cytosol	74.39	47.78
CDY45043	Canola	cytosol	74.39	47.78
CDY50974	Canola	cytosol	74.39	47.78
CDY66630	Canola	cytosol	69.2	45.98
CDY42295	Canola	cytosol	70.93	45.56
CDY42294	Canola	cytosol	70.93	45.56
HORVU1Hr1G081280.1	Barley	cytosol	70.93	45.45
KXG37669	Sorghum	cytosol	70.93	45.45
CDX88875	Canola	cytosol	70.59	45.33
CDX92501	Canola	cytosol	70.59	45.33
CDX92502	Canola	cytosol	70.59	45.33
CDX70890	Canola	cytosol	70.59	45.33
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	70.59	45.23
KXG37668	Sorghum	cytosol	70.59	45.23
Os11t0247300-01	Rice	plasma membrane	70.59	45.23
TraesCS1A01G350200.1	Wheat	golgi	70.59	45.23
Zm00001d033850_P003	Maize	cytosol	70.59	45.23
TraesCS1B01G364500.3	Wheat	cytosol	70.59	45.23
TraesCS4B01G056700.1	Wheat	cytosol	70.59	45.23
Zm00001d013367_P001	Maize	plastid	70.59	45.23
TraesCS4D01G057000.1	Wheat	cytosol	70.59	45.23
TraesCS4A01G257800.1	Wheat	cytosol	70.59	45.23
TraesCS1D01G353100.5	Wheat	cytosol	70.59	45.23
CDY44941	Canola	cytosol	70.24	45.11
CDY44942	Canola	cytosol	70.24	45.11
CDY25017	Canola	cytosol	60.55	42.68
GSMUA_Achr7P17960_001	Banana	cytosol	53.63	39.04
CDY05559	Canola	mitochondrion	56.75	32.6
CDX68422	Canola	cytosol	25.95	26.13
CDY21784	Canola	cytosol	30.1	20.37
CDX99087	Canola	cytosol	30.1	20.37
CDY67078	Canola	cytosol	26.99	19.8
CDX88051	Canola	cytosol	29.07	19.72
CDY69221	Canola	cytosol	30.1	19.55
CDY60599	Canola	cytosol	30.1	19.55
CDY45452	Canola	cytosol	30.1	19.38
CDY00319	Canola	cytosol	30.1	19.33
CDX84345	Canola	cytosol	30.1	19.33
CDX86102	Canola	plasma membrane	30.1	19.33
CDY38073	Canola	cytosol	30.1	19.33
CDX96965	Canola	cytosol	29.76	19.33
CDY14924	Canola	cytosol	29.76	19.28
CDY51360	Canola	cytosol	29.76	19.15
CDY53366	Canola	cytosol	29.76	19.15
CDX97877	Canola	cytosol	29.76	19.15
CDY31638	Canola	cytosol	29.41	19.14
CDY49002	Canola	cytosol	29.41	19.1
CDY13108	Canola	cytosol	29.41	19.1
CDX82788	Canola	cytosol	29.41	19.06
CDX79013	Canola	cytosol	29.41	19.06
CDX87664	Canola	cytosol	29.41	19.02
CDX73198	Canola	cytosol	29.41	19.02
CDY31428	Canola	cytosol	29.07	18.83
CDX84283	Canola	cytosol	29.07	18.83
CDX76444	Canola	cytosol	29.07	18.83
CDX80390	Canola	cytosol	29.07	18.71
CDX98679	Canola	cytosol	28.72	18.61
CDX94014	Canola	cytosol	28.37	18.39
CDX69693	Canola	cytosol	29.07	18.22
CDX97180	Canola	cytosol	29.07	17.46
CDY11370	Canola	cytosol	21.11	12.9
CDX71723	Canola	cytosol	21.11	12.9

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	GO:A0A078I838	UniProt:A0A078I838
InterPro:Alpha_tubulin	EnsemblPlants:CDY46272	ProteinID:CDY46272	ProteinID:CDY46272.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00083629001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00865	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	UniParc:UPI0004EDCB52
SEG:seg	:	:	:	:	:

Description

BnaC05g50610DBnaC05g50610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I838]

Coordinates

chrLK032657:-:107170..108298

Molecular Weight (calculated)

31831.8 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.194

Length

289 amino acids

Sequence
(BLAST)

001: MPLEEELDLV LDHFSSRGSL STMGKSPSSV YPSLPLSLSL TTVSSPLTPS WNTLMSLSSS TMKLSTTSAG VPLTLRGQPQ PYQILKLSLP LRFDGALNVD
101: VTEFQTNLVP YPRIHFMLSS YAPQLSVAEI TSSAFEPASM MAKCDPRHGK YMACCLMYRG DVVPKDVNAA VGTIKTKRTI QFVDWCPTGF KCGINYQPPT
201: VVPGGDLAKV QRAVCMISNS TSVAEVFSRI DHKFDLMYAK RAFFHWYVGE GMEEGEFSEA REDLAALEKD YEEVGAEGGD DEDDEGEEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.