CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018379.1-P	Field mustard	cytosol	99.78	99.78
CDX97877	Canola	cytosol	99.55	99.55
CDY45452	Canola	cytosol	99.55	99.55
CDY51360	Canola	cytosol	99.55	99.55
AT2G29550.1	Thale cress	cytosol	97.77	97.77
CDY67078	Canola	cytosol	85.3	97.21
CDY00319	Canola	cytosol	96.21	96.0
CDY38073	Canola	cytosol	96.21	96.0
CDX86102	Canola	plasma membrane	96.21	96.0
CDX84345	Canola	cytosol	96.21	96.0
CDY21784	Canola	cytosol	91.09	95.78
CDX99087	Canola	cytosol	91.09	95.78
CDX88051	Canola	cytosol	90.87	95.77
CDX80390	Canola	cytosol	95.77	95.77
CDX68422	Canola	cytosol	60.8	95.12
CDX87664	Canola	cytosol	93.54	93.96
CDX73198	Canola	cytosol	93.54	93.96
CDY31638	Canola	cytosol	92.43	93.47
CDX94014	Canola	cytosol	92.65	93.27
CDX98679	Canola	cytosol	92.43	93.05
CDX84283	Canola	cytosol	92.2	92.83
CDX76444	Canola	cytosol	92.2	92.83
CDY31428	Canola	cytosol	92.2	92.83
CDX69693	Canola	cytosol	94.88	92.41
CDX82788	Canola	cytosol	91.76	92.38
CDX79013	Canola	cytosol	91.76	92.38
CDY60599	Canola	cytosol	91.54	92.36
CDY69221	Canola	cytosol	91.54	92.36
CDY49002	Canola	cytosol	91.31	92.13
CDX96965	Canola	cytosol	91.31	92.13
CDY14924	Canola	cytosol	91.31	91.93
CDY13108	Canola	cytosol	91.09	91.91
CDX97180	Canola	cytosol	94.88	88.57
CDY25017	Canola	cytosol	39.64	43.41
CDY66630	Canola	cytosol	41.43	42.76
CDY03583	Canola	cytosol	42.76	42.67
CDY45043	Canola	cytosol	42.76	42.67
CDY42295	Canola	cytosol	42.54	42.44
CDY50974	Canola	cytosol	42.54	42.44
CDY42294	Canola	cytosol	42.54	42.44
CDY28123	Canola	cytosol	42.54	42.44
CDY44941	Canola	cytosol	42.32	42.22
CDY44942	Canola	cytosol	42.32	42.22
CDX88875	Canola	cytosol	42.09	42.0
CDX70890	Canola	cytosol	42.09	42.0
CDX92502	Canola	cytosol	41.87	41.78
CDX92501	Canola	cytosol	41.87	41.78
CDY29334	Canola	cytosol	39.87	41.53
CDY35856	Canola	cytosol	11.8	35.57
CDY11370	Canola	cytosol	35.19	33.4
CDX71723	Canola	cytosol	35.19	33.4
CDY46272	Canola	cytosol	19.15	29.76
CDY05559	Canola	mitochondrion	29.4	26.24

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078IU42	UniProt:A0A078IU42
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	EnsemblPlants:CDY53366	ProteinID:CDY53366	ProteinID:CDY53366.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00010511001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EEC03A	SEG:seg	:	:

Description

BnaC04g54460DTubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A078IU42]

Coordinates

chrLK033193:+:44677..46913

Molecular Weight (calculated)

50640.7 Da

IEP (calculated)

4.428

GRAVY (calculated)

-0.408

Length

449 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCAEHGI DQTGRYQGDS DLQLERVNVY YNEASCGMYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA EEEGEYEDEE AEYEQEEGY

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.