CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015815.1-P	Field mustard	cytosol	100.0	100.0
CDX87664	Canola	cytosol	100.0	100.0
AT1G75780.1	Thale cress	cytosol	98.66	98.66
VIT_18s0001g14360.t01	Wine grape	cytosol	96.2	95.98
CDY67078	Canola	cytosol	83.67	94.92
PGSC0003DMT400025739	Potato	cytosol	95.53	94.68
Solyc04g081490.2.1	Tomato	nucleus	95.3	94.46
CDY31638	Canola	cytosol	93.51	94.14
KRH51701	Soybean	nucleus	94.18	93.97
CDX84283	Canola	cytosol	93.51	93.72
CDX97877	Canola	cytosol	93.96	93.54
CDY53366	Canola	cytosol	93.96	93.54
CDY45452	Canola	cytosol	93.96	93.54
CDY51360	Canola	cytosol	93.96	93.54
KRH61035	Soybean	nucleus	93.74	93.32
KRH05958	Soybean	nucleus	93.74	93.32
CDX86102	Canola	plasma membrane	93.74	93.11
CDY38073	Canola	cytosol	93.74	93.11
CDX84345	Canola	cytosol	93.74	93.11
CDY00319	Canola	cytosol	93.74	93.11
CDX94014	Canola	cytosol	92.62	92.83
CDY21784	Canola	cytosol	88.59	92.74
CDX99087	Canola	cytosol	88.59	92.74
CDY31428	Canola	cytosol	92.39	92.6
CDX76444	Canola	cytosol	92.39	92.6
CDX98679	Canola	cytosol	92.17	92.38
Solyc12g089310.1.1	Tomato	nucleus	93.06	92.24
CDX79013	Canola	cytosol	91.95	92.15
CDX82788	Canola	cytosol	91.95	92.15
CDY69221	Canola	cytosol	91.72	92.13
CDY60599	Canola	cytosol	91.5	91.91
CDY49002	Canola	cytosol	91.5	91.91
KRH17435	Soybean	nucleus	93.96	91.9
PGSC0003DMT400075425	Potato	cytosol	92.62	91.8
CDX80390	Canola	cytosol	92.17	91.76
CDX96965	Canola	cytosol	91.28	91.69
CDY14924	Canola	cytosol	91.28	91.48
CDY13108	Canola	cytosol	91.05	91.46
CDX88051	Canola	cytosol	87.02	91.31
CDX68422	Canola	cytosol	58.61	91.29
CDX69693	Canola	cytosol	92.84	90.02
CDX97180	Canola	cytosol	92.84	86.28
CDY25017	Canola	cytosol	39.82	43.41
CDY66630	Canola	cytosol	41.16	42.3
CDY45043	Canola	cytosol	42.51	42.22
CDY03583	Canola	cytosol	42.51	42.22
CDY50974	Canola	cytosol	42.28	42.0
CDY42295	Canola	cytosol	42.28	42.0
CDY42294	Canola	cytosol	42.28	42.0
CDY28123	Canola	cytosol	42.28	42.0
CDX88875	Canola	cytosol	42.06	41.78
CDY44942	Canola	cytosol	42.06	41.78
CDY44941	Canola	cytosol	42.06	41.78
CDX70890	Canola	cytosol	42.06	41.78
CDX92501	Canola	cytosol	41.83	41.56
CDX92502	Canola	cytosol	41.83	41.56
CDY29334	Canola	cytosol	39.6	41.07
CDY35856	Canola	cytosol	11.86	35.57
CDY11370	Canola	cytosol	35.57	33.62
CDX71723	Canola	cytosol	35.57	33.62
CDY46272	Canola	cytosol	19.02	29.41
CDY05559	Canola	mitochondrion	30.2	26.84

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078DGX1	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	EnsemblPlants:CDX73198	ProteinID:CDX73198	ProteinID:CDX73198.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00103691001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF116	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002541FE6
SEG:seg	:	:	:	:	:

Description

BnaC06g36460D

Coordinates

chrLK031797:-:2639604..2642299

Molecular Weight (calculated)

50161.1 Da

IEP (calculated)

4.425

GRAVY (calculated)

-0.368

Length

447 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT AEEEGEYEDE EEEVYES

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.