Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87664 | Canola | cytosol | 98.66 | 98.66 |
| CDX73198 | Canola | cytosol | 98.66 | 98.66 |
| Bra015815.1-P | Field mustard | cytosol | 98.66 | 98.66 |
| VIT_18s0001g14360.t01 | Wine grape | cytosol | 96.2 | 95.98 |
| AT1G20010.1 | Thale cress | cytosol | 95.75 | 95.32 |
| PGSC0003DMT400025739 | Potato | cytosol | 95.53 | 94.68 |
| Solyc04g081490.2.1 | Tomato | nucleus | 95.3 | 94.46 |
| KRH05958 | Soybean | nucleus | 93.74 | 93.32 |
| KRH51701 | Soybean | nucleus | 93.51 | 93.3 |
| AT2G29550.1 | Thale cress | cytosol | 93.51 | 93.1 |
| AT5G62700.1 | Thale cress | cytosol | 93.29 | 92.67 |
| AT5G62690.1 | Thale cress | cytosol | 93.29 | 92.67 |
| KRH61035 | Soybean | nucleus | 93.06 | 92.65 |
| Solyc12g089310.1.1 | Tomato | nucleus | 93.06 | 92.24 |
| AT5G23860.1 | Thale cress | cytosol | 92.62 | 92.2 |
| AT5G12250.1 | Thale cress | cytosol | 92.62 | 92.2 |
| KRH17435 | Soybean | nucleus | 93.74 | 91.68 |
| AT5G44340.1 | Thale cress | cytosol | 91.05 | 91.67 |
| AT4G20890.1 | Thale cress | cytosol | 91.05 | 91.67 |
| PGSC0003DMT400075425 | Potato | cytosol | 92.17 | 91.35 |
| AT5G19780.1 | Thale cress | cytosol | 42.06 | 41.78 |
| AT5G19770.1 | Thale cress | cytosol | 42.06 | 41.78 |
| AT1G04820.1 | Thale cress | cytosol | 41.83 | 41.56 |
| AT1G50010.1 | Thale cress | cytosol | 41.83 | 41.56 |
| AT1G64740.1 | Thale cress | cytosol | 41.61 | 41.33 |
| AT4G14960.2 | Thale cress | cytosol | 41.61 | 41.33 |
| AT3G61650.1 | Thale cress | cytosol | 35.12 | 33.12 |
| AT5G05620.1 | Thale cress | cytosol | 34.68 | 32.7 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:843911 | UniProt:A0A178WQG2 |
| ProteinID:AAA32893.1 | ProteinID:AAD02498.1 | ProteinID:AAF26774.2 | ProteinID:AAF87106.1 | ProteinID:AEE35758.1 | EMBL:AK117262 |
| ArrayExpress:AT1G75780 | EnsemblPlantsGene:AT1G75780 | RefSeq:AT1G75780 | TAIR:AT1G75780 | RefSeq:AT1G75780-TAIR-G | EnsemblPlants:AT1G75780.1 |
| TAIR:AT1G75780.1 | EMBL:BT005372 | InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009826 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0016787 | GO:GO:0040007 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_177706.1 |
| ProteinID:OAP19803.1 | UniProt:P12411 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005020 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 |
| PANTHER:PTHR11588:SF116 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | Symbol:TUB1 |
| InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C |
| InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI00001369B6 | SEG:seg | : | : |
Description
TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
Coordinates
chr1:-:28451138..28453820
Molecular Weight (calculated)
50220.1 Da
IEP (calculated)
4.419
GRAVY (calculated)
-0.380
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.