Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G75780.1 | Thale cress | cytosol | 95.32 | 95.75 |
| VIT_18s0001g14360.t01 | Wine grape | cytosol | 93.76 | 93.97 |
| PGSC0003DMT400025739 | Potato | cytosol | 93.54 | 93.13 |
| Solyc04g081490.2.1 | Tomato | nucleus | 93.32 | 92.9 |
| AT5G44340.1 | Thale cress | cytosol | 91.54 | 92.57 |
| KRH05958 | Soybean | nucleus | 92.43 | 92.43 |
| AT5G62700.1 | Thale cress | cytosol | 92.2 | 92.0 |
| AT5G62690.1 | Thale cress | cytosol | 92.2 | 92.0 |
| AT4G20890.1 | Thale cress | cytosol | 90.87 | 91.89 |
| AT2G29550.1 | Thale cress | cytosol | 91.76 | 91.76 |
| KRH51701 | Soybean | nucleus | 91.54 | 91.74 |
| AT5G12250.1 | Thale cress | cytosol | 91.31 | 91.31 |
| AT5G23860.1 | Thale cress | cytosol | 91.09 | 91.09 |
| KRH61035 | Soybean | nucleus | 91.09 | 91.09 |
| Solyc12g089310.1.1 | Tomato | nucleus | 91.31 | 90.91 |
| KRH17435 | Soybean | nucleus | 92.43 | 90.81 |
| PGSC0003DMT400075425 | Potato | cytosol | 90.87 | 90.47 |
| AT5G19780.1 | Thale cress | cytosol | 42.32 | 42.22 |
| AT5G19770.1 | Thale cress | cytosol | 42.32 | 42.22 |
| AT1G04820.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT4G14960.2 | Thale cress | cytosol | 41.87 | 41.78 |
| AT1G50010.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT1G64740.1 | Thale cress | cytosol | 41.65 | 41.56 |
| AT3G61650.1 | Thale cress | cytosol | 35.41 | 33.54 |
| AT5G05620.1 | Thale cress | cytosol | 34.97 | 33.12 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:838590 | UniProt:A0A178W9M8 |
| ProteinID:AAA32883.1 | ProteinID:AAF79912.1 | ProteinID:AEE29922.1 | EMBL:AF361585 | ArrayExpress:AT1G20010 | EnsemblPlantsGene:AT1G20010 |
| RefSeq:AT1G20010 | TAIR:AT1G20010 | RefSeq:AT1G20010-TAIR-G | EnsemblPlants:AT1G20010.1 | TAIR:AT1G20010.1 | EMBL:AY093989 |
| InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0005886 | GO:GO:0007010 | GO:GO:0007017 |
| GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030312 | GO:GO:0045298 | InterPro:IPR023123 | InterPro:IPR036525 |
| InterPro:IPR037103 | RefSeq:NP_564101.1 | ProteinID:OAP15150.1 | UniProt:P29513 | PFAM:PF00091 | PFAM:PF03953 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 |
| PANTHER:PTHR11588:SF116 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | Symbol:TUB5 |
| InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C |
| InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0000000EE2 | SEG:seg | : | : |
Description
TUBB5Tubulin beta-5 chain [Source:UniProtKB/Swiss-Prot;Acc:P29513]
Coordinates
chr1:-:6937719..6940832
Molecular Weight (calculated)
50345.3 Da
IEP (calculated)
4.397
GRAVY (calculated)
-0.357
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.