Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G62690.1 | Thale cress | cytosol | 100.0 | 100.0 |
| Bra010114.1-P | Field mustard | cytosol | 99.78 | 99.78 |
| CDX84345 | Canola | cytosol | 99.78 | 99.78 |
| CDX86102 | Canola | plasma membrane | 99.78 | 99.78 |
| CDY00319 | Canola | cytosol | 99.78 | 99.78 |
| CDY38073 | Canola | cytosol | 99.78 | 99.78 |
| CDY21784 | Canola | cytosol | 94.67 | 99.77 |
| CDX99087 | Canola | cytosol | 94.67 | 99.77 |
| Bra018184.1-P | Field mustard | cytosol | 99.11 | 99.33 |
| Bra033796.1-P | Field mustard | cytosol | 98.89 | 99.11 |
| EER95686 | Sorghum | cytosol | 96.44 | 97.31 |
| Os03t0105600-01 | Rice | plasma membrane | 95.78 | 96.42 |
| TraesCS5A01G534300.1 | Wheat | cytosol | 95.78 | 96.42 |
| VIT_08s0007g01630.t01 | Wine grape | cytosol | 95.78 | 96.42 |
| TraesCSU01G137900.1 | Wheat | cytosol | 95.78 | 96.21 |
| PGSC0003DMT400028800 | Potato | cytosol | 95.56 | 96.2 |
| Zm00001d040509_P001 | Maize | cytosol | 47.33 | 95.95 |
| AT5G23860.1 | Thale cress | cytosol | 95.56 | 95.77 |
| TraesCS4B01G366500.1 | Wheat | cytosol | 95.56 | 95.77 |
| Solyc10g086760.1.1 | Tomato | nucleus | 95.11 | 95.54 |
| PGSC0003DMT400049212 | Potato | cytosol | 95.11 | 95.54 |
| AT2G29550.1 | Thale cress | cytosol | 94.89 | 95.1 |
| Solyc10g085020.1.1 | Tomato | nucleus | 95.78 | 94.93 |
| AT5G12250.1 | Thale cress | cytosol | 93.78 | 93.99 |
| AT1G75780.1 | Thale cress | cytosol | 92.67 | 93.29 |
| AT4G20890.1 | Thale cress | cytosol | 91.11 | 92.34 |
| AT1G20010.1 | Thale cress | cytosol | 92.0 | 92.2 |
| AT5G44340.1 | Thale cress | cytosol | 90.67 | 91.89 |
| Zm00001d008216_P002 | Maize | cytosol | 48.44 | 91.21 |
| AT1G50010.1 | Thale cress | cytosol | 42.89 | 42.89 |
| AT1G04820.1 | Thale cress | cytosol | 42.89 | 42.89 |
| AT4G14960.2 | Thale cress | cytosol | 42.67 | 42.67 |
| AT5G19770.1 | Thale cress | cytosol | 42.44 | 42.44 |
| AT5G19780.1 | Thale cress | cytosol | 42.44 | 42.44 |
| AT1G64740.1 | Thale cress | cytosol | 42.22 | 42.22 |
| AT3G61650.1 | Thale cress | cytosol | 35.11 | 33.33 |
| AT5G05620.1 | Thale cress | cytosol | 34.67 | 32.91 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:836390 | EntrezGene:836391 |
| UniProt:A0A178UP81 | ProteinID:AAA32881.1 | ProteinID:AAA32882.1 | ProteinID:AED97643.1 | ProteinID:AED97644.1 | EMBL:AF367332 |
| EMBL:AK117431 | EMBL:AK221201 | ArrayExpress:AT5G62700 | EnsemblPlantsGene:AT5G62700 | RefSeq:AT5G62700 | TAIR:AT5G62700 |
| RefSeq:AT5G62700-TAIR-G | EnsemblPlants:AT5G62700.1 | TAIR:AT5G62700.1 | EMBL:AY056411 | EMBL:AY060550 | EMBL:AY062614 |
| EMBL:AY062742 | EMBL:AY087859 | EMBL:AY093986 | EMBL:AY128785 | ProteinID:BAA97216.1 | ProteinID:BAB10838.1 |
| EMBL:BT002587 | InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_568959.1 | RefSeq:NP_568960.1 |
| ProteinID:OAO94914.1 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0009010 |
| PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF259 |
| UniProt:Q56YW9 | UniProt:Q9ASR0 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 |
| Symbol:TUB3 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf |
| InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI00001369D5 | SEG:seg | : |
Description
TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
Coordinates
chr5:+:25184258..25186777
Molecular Weight (calculated)
50736.8 Da
IEP (calculated)
4.433
GRAVY (calculated)
-0.421
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.