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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G61650.1 Thale cress cytosol 98.1 98.1
Bra007622.1-P Field mustard cytosol 96.62 96.83
CDX71723 Canola cytosol 96.62 96.83
CDY11370 Canola cytosol 96.62 96.83
VIT_15s0046g01350.t01 Wine grape cytosol 96.2 96.2
KRH68880 Soybean endoplasmic reticulum 93.46 93.46
PGSC0003DMT400039263 Potato cytosol 93.04 93.04
KRG97131 Soybean cytosol 93.04 93.04
Solyc03g111380.2.1 Tomato cytosol 92.83 92.83
Os05t0156600-01 Rice cytosol 91.56 92.54
EES19069 Sorghum cytosol 91.35 92.32
TraesCS1A01G099400.1 Wheat cytosol 89.87 90.83
HORVU1Hr1G023030.2 Barley cytosol 89.87 90.83
TraesCS1B01G124800.1 Wheat cytosol 89.87 90.83
TraesCS1D01G107300.1 Wheat cytosol 89.87 90.83
GSMUA_Achr1P14750_001 Banana cytosol 90.3 89.54
Zm00001d035567_P001 Maize nucleus 44.51 84.4
Zm00001d013636_P001 Maize nucleus, plastid 41.77 75.57
AT5G44340.1 Thale cress cytosol 33.33 35.59
AT5G12250.1 Thale cress cytosol 33.12 34.97
AT1G20010.1 Thale cress cytosol 33.12 34.97
AT4G20890.1 Thale cress cytosol 32.7 34.91
AT2G29550.1 Thale cress cytosol 32.91 34.74
AT1G75780.1 Thale cress cytosol 32.7 34.68
AT5G62700.1 Thale cress cytosol 32.91 34.67
AT5G62690.1 Thale cress cytosol 32.91 34.67
AT5G23860.1 Thale cress cytosol 32.7 34.52
AT4G14960.2 Thale cress cytosol 29.75 31.33
AT1G50010.1 Thale cress cytosol 29.75 31.33
AT1G04820.1 Thale cress cytosol 29.75 31.33
AT5G19780.1 Thale cress cytosol 29.32 30.89
AT5G19770.1 Thale cress cytosol 29.32 30.89
AT1G64740.1 Thale cress cytosol 28.9 30.44
Protein Annotations
Gene3D:1.10.287.600MapMan:20.1.2.1.1Gene3D:3.30.1330.20Gene3D:3.40.50.1440EntrezGene:830445UniProt:A0A178UJQ8
ProteinID:AAA20654.1ProteinID:AED90900.1ArrayExpress:AT5G05620EnsemblPlantsGene:AT5G05620RefSeq:AT5G05620TAIR:AT5G05620
RefSeq:AT5G05620-TAIR-GEnsemblPlants:AT5G05620.1TAIR:AT5G05620.1ProteinID:BAB09656.1EMBL:BT030394GO:GO:0000166
GO:GO:0000911GO:GO:0000930GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005635GO:GO:0005737GO:GO:0005739GO:GO:0005815GO:GO:0005856GO:GO:0005874
GO:GO:0005886GO:GO:0005938GO:GO:0007017GO:GO:0007020GO:GO:0007049GO:GO:0007275
GO:GO:0008150GO:GO:0009605GO:GO:0009607GO:GO:0009624GO:GO:0009653GO:GO:0009791
GO:GO:0009987GO:GO:0010103GO:GO:0016020GO:GO:0016043GO:GO:0016049GO:GO:0016787
GO:GO:0030154GO:GO:0030312GO:GO:0031122GO:GO:0040007GO:GO:0048366GO:GO:0048768
GO:GO:0051641InterPro:Gamma_tubulinInterPro:IPR023123InterPro:IPR036525InterPro:IPR037103RefSeq:NP_196181.1
ProteinID:OAO94256.1UniProt:P38558PFAM:PF00091PFAM:PF03953PO:PO:0000293PRINTS:PR01161
PRINTS:PR01164ScanProsite:PS00227PANTHER:PTHR11588PANTHER:PTHR11588:SF7SMART:SM00864SMART:SM00865
SUPFAM:SSF52490SUPFAM:SSF55307Symbol:TUBG2InterPro:Tub_FtsZ_CInterPro:TubulinInterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sfInterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_CInterPro:Tubulin_CSInterPro:Tubulin_FtsZ_GTPaseUniParc:UPI0000136A58
Description
TUBG2Tubulin gamma-2 chain [Source:UniProtKB/Swiss-Prot;Acc:P38558]
Coordinates
chr5:+:1679230..1682055
Molecular Weight (calculated)
53280.5 Da
IEP (calculated)
5.947
GRAVY (calculated)
-0.322
Length
474 amino acids
Sequence
(BLAST)
001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG EYRNLYNHEN IFLSDHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IDWGPASIQV ALSKKSPYVQ TSHRVSGLML ASHTSIRHLF SRCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPGQLMTG EGNASGVADP KLAF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.