Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G19780.1 | Thale cress | cytosol | 100.0 | 100.0 |
| CDX70890 | Canola | cytosol | 99.78 | 99.78 |
| CDX88875 | Canola | cytosol | 99.78 | 99.78 |
| CDY42294 | Canola | cytosol | 99.78 | 99.78 |
| CDY42295 | Canola | cytosol | 99.78 | 99.78 |
| CDX92502 | Canola | cytosol | 99.56 | 99.56 |
| CDX92501 | Canola | cytosol | 99.56 | 99.56 |
| Bra002261.1-P | Field mustard | cytosol | 99.56 | 99.56 |
| Bra020062.1-P | Field mustard | cytosol | 99.56 | 99.56 |
| CDY44941 | Canola | cytosol | 99.33 | 99.33 |
| CDY44942 | Canola | cytosol | 99.33 | 99.33 |
| Bra006517.1-P | Field mustard | cytosol | 98.89 | 98.89 |
| Bra002260.1-P | Field mustard | cytosol | 89.56 | 98.29 |
| Bra020061.1-P | Field mustard | cytosol | 98.0 | 98.0 |
| KRH58942 | Soybean | nucleus | 97.78 | 98.0 |
| KRH42841 | Soybean | cytosol, nucleus | 97.56 | 97.56 |
| AT1G50010.1 | Thale cress | cytosol | 92.44 | 92.44 |
| AT1G04820.1 | Thale cress | cytosol | 92.44 | 92.44 |
| AT4G14960.2 | Thale cress | cytosol | 92.22 | 92.22 |
| AT1G64740.1 | Thale cress | cytosol | 92.22 | 92.22 |
| AT5G44340.1 | Thale cress | cytosol | 42.0 | 42.57 |
| AT5G62700.1 | Thale cress | cytosol | 42.44 | 42.44 |
| AT5G62690.1 | Thale cress | cytosol | 42.44 | 42.44 |
| AT1G20010.1 | Thale cress | cytosol | 42.22 | 42.32 |
| AT4G20890.1 | Thale cress | cytosol | 41.56 | 42.12 |
| AT5G12250.1 | Thale cress | cytosol | 42.0 | 42.09 |
| AT1G75780.1 | Thale cress | cytosol | 41.78 | 42.06 |
| AT2G29550.1 | Thale cress | cytosol | 41.78 | 41.87 |
| AT5G23860.1 | Thale cress | cytosol | 41.56 | 41.65 |
| AT5G05620.1 | Thale cress | cytosol | 30.89 | 29.32 |
| AT3G61650.1 | Thale cress | cytosol | 30.22 | 28.69 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.1 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:832097 | EntrezGene:832098 |
| UniProt:A0A178UTQ9 | ProteinID:AAA32888.1 | ProteinID:AAA32891.1 | ProteinID:AED92747.1 | ProteinID:AED92748.1 | EMBL:AF296838 |
| EMBL:AF367301 | EMBL:AK222069 | EMBL:AK317604 | ArrayExpress:AT5G19770 | EnsemblPlantsGene:AT5G19770 | RefSeq:AT5G19770 |
| TAIR:AT5G19770 | RefSeq:AT5G19770-TAIR-G | EnsemblPlants:AT5G19770.1 | TAIR:AT5G19770.1 | EMBL:AY040012 | EMBL:AY065164 |
| EMBL:AY079366 | EMBL:AY143895 | InterPro:Alpha_tubulin | UniProt:B9DHQ0 | EMBL:BT000718 | EMBL:BT000719 |
| EMBL:BT001197 | InterPro:Beta-tubulin_BS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 |
| GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | InterPro:IPR023123 |
| InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_197478.1 | RefSeq:NP_197479.1 | ProteinID:OAO96232.1 | PFAM:PF00091 |
| PFAM:PF03953 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0006339 |
| PO:PO:0009010 | PO:PO:0020030 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01162 |
| ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF48 | UniProt:Q56WH1 | SMART:SM00864 |
| SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | Symbol:TUA3 | InterPro:Tub_FtsZ_C | InterPro:Tubulin |
| InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase |
| UniParc:UPI0000136983 | SEG:seg | : | : | : | : |
Description
TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
Coordinates
chr5:-:6682420..6684744
Molecular Weight (calculated)
49656.9 Da
IEP (calculated)
4.723
GRAVY (calculated)
-0.154
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.