CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58942	Soybean	nucleus	99.56	99.78
AT5G19780.1	Thale cress	cytosol	97.56	97.56
AT5G19770.1	Thale cress	cytosol	97.56	97.56
CDY42295	Canola	cytosol	97.33	97.33
CDY42294	Canola	cytosol	97.33	97.33
CDX88875	Canola	cytosol	97.33	97.33
CDX70890	Canola	cytosol	97.33	97.33
Bra020062.1-P	Field mustard	cytosol	97.11	97.11
CDX92501	Canola	cytosol	97.11	97.11
CDX92502	Canola	cytosol	97.11	97.11
Bra002261.1-P	Field mustard	cytosol	97.11	97.11
CDY44941	Canola	cytosol	96.89	96.89
CDY44942	Canola	cytosol	96.89	96.89
Bra006517.1-P	Field mustard	cytosol	96.44	96.44
Bra002260.1-P	Field mustard	cytosol	87.11	95.61
Bra020061.1-P	Field mustard	cytosol	95.56	95.56
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	92.89	94.36
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	94.44	94.23
KRH35640	Soybean	cytosol, nucleus	91.56	91.76
KRH04356	Soybean	cytosol	51.11	91.63
KRG91143	Soybean	nucleus	91.33	91.54
KRH62139	Soybean	nucleus	91.56	91.15
KRH52851	Soybean	cytosol, nucleus	91.33	90.93
KRH77187	Soybean	endoplasmic reticulum	90.67	90.47
KRH28301	Soybean	cytosol, endoplasmic reticulum	90.67	90.47
KRH58181	Soybean	nucleus	90.44	90.44
KRH04357	Soybean	cytosol	34.0	90.0
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	88.44	89.64
KRH58404	Soybean	nucleus	42.22	42.99
KRH11812	Soybean	nucleus	42.44	42.83
KRH36829	Soybean	nucleus	42.44	42.83
KRH75786	Soybean	nucleus	42.67	42.76
KRH66728	Soybean	nucleus	42.44	42.54
KRH65977	Soybean	nucleus	42.44	42.54
KRG95065	Soybean	plasma membrane	42.44	42.44
KRH42279	Soybean	cytosol	41.78	42.44
KRH51701	Soybean	nucleus	42.22	42.41
KRH05958	Soybean	nucleus	41.78	41.87
KRH61035	Soybean	nucleus	41.78	41.87
KRH41834	Soybean	cytosol	41.33	41.8
KRH60536	Soybean	endoplasmic reticulum	41.33	41.8
KRG91525	Soybean	nucleus	41.11	41.29
KRH35301	Soybean	nucleus	41.11	41.29
KRH17435	Soybean	nucleus	41.78	41.14
KRH59870	Soybean	endoplasmic reticulum	40.44	40.81
KRH41169	Soybean	cytosol	40.0	40.45
KRH68880	Soybean	endoplasmic reticulum	29.56	28.06
KRG97131	Soybean	cytosol	29.33	27.85

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02004832	InterPro:Alpha_tubulin
InterPro:Beta-tubulin_BS	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G115100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	UniProt:I1KSD0	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH42841	ProteinID:KRH42841	ProteinID:KRH42841.1	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002338F6E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:8812595..8815874

Molecular Weight (calculated)

49680.9 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.140

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDS SFGVAHDAFN TFFSETGSGK HVPRAVFVDL EPTVIDEVRC GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGA EDDEEGEDYS

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.