CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04356	Soybean	cytosol	55.78	100.0
KRH04357	Soybean	cytosol	37.33	98.82
KRH77187	Soybean	endoplasmic reticulum	96.44	96.23
KRG91143	Soybean	nucleus	96.0	96.21
KRH35640	Soybean	cytosol, nucleus	96.0	96.21
KRH28301	Soybean	cytosol, endoplasmic reticulum	96.22	96.01
KRH62139	Soybean	nucleus	96.22	95.8
KRH52851	Soybean	cytosol, nucleus	96.0	95.58
TraesCS5D01G417700.1	Wheat	cytosol	94.67	94.46
TraesCS5B01G412700.1	Wheat	cytosol	94.44	94.23
TraesCS5A01G407800.1	Wheat	golgi	94.44	94.23
GSMUA_Achr7P17960_001	Banana	cytosol	83.11	94.21
Zm00001d013159_P001	Maize	cytosol	92.44	92.44
EER93374	Sorghum	cytosol	92.44	92.44
KRH58942	Soybean	nucleus	90.67	90.87
KRH42841	Soybean	cytosol, nucleus	90.44	90.44
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	88.67	90.07
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.33	89.14
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	94.44	85.34
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	84.0	85.14
KRH11812	Soybean	nucleus	42.0	42.38
KRH58404	Soybean	nucleus	41.56	42.31
KRG95065	Soybean	plasma membrane	42.22	42.22
KRH36829	Soybean	nucleus	41.78	42.15
KRH75786	Soybean	nucleus	42.0	42.09
KRH66728	Soybean	nucleus	42.0	42.09
KRH41834	Soybean	cytosol	41.56	42.02
KRH60536	Soybean	endoplasmic reticulum	41.56	42.02
KRH65977	Soybean	nucleus	41.78	41.87
KRH42279	Soybean	cytosol	41.11	41.76
KRH61035	Soybean	nucleus	41.56	41.65
KRH51701	Soybean	nucleus	41.33	41.52
KRH05958	Soybean	nucleus	41.11	41.2
KRH35301	Soybean	nucleus	40.89	41.07
KRG91525	Soybean	nucleus	40.89	41.07
KRH59870	Soybean	endoplasmic reticulum	40.22	40.58
KRH17435	Soybean	nucleus	40.89	40.26
KRH41169	Soybean	cytosol	39.78	40.22
KRH68880	Soybean	endoplasmic reticulum	30.22	28.69
KRG97131	Soybean	cytosol	30.0	28.48

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100787058	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02003218
InterPro:Alpha_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G110200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	UniProt:I1K2I1
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH58181	ProteinID:KRH58181	ProteinID:KRH58181.1
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF242	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233A569	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:29211953..29214343

Molecular Weight (calculated)

49600.7 Da

IEP (calculated)

4.732

GRAVY (calculated)

-0.197

Length

450 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVELCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AHHEQLSVGE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGIIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVVEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEAT EDGDEGEDYD

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.