CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65977	Soybean	nucleus	99.55	99.55
EER95686	Sorghum	cytosol	95.77	96.41
Zm00001d040509_P001	Maize	cytosol	47.66	96.4
KRG91525	Soybean	nucleus	95.77	95.98
KRH35301	Soybean	nucleus	95.77	95.98
Os03t0105600-01	Rice	plasma membrane	95.32	95.75
TraesCS5A01G534300.1	Wheat	cytosol	95.32	95.75
KRH11812	Soybean	nucleus	95.1	95.74
KRH36829	Soybean	nucleus	95.1	95.74
TraesCSU01G137900.1	Wheat	cytosol	95.32	95.54
KRH58404	Soybean	nucleus	93.99	95.48
TraesCS4B01G366500.1	Wheat	cytosol	95.1	95.1
KRH42279	Soybean	cytosol	93.76	95.03
KRG95065	Soybean	plasma membrane	93.99	93.78
KRH66728	Soybean	nucleus	93.76	93.76
KRH05958	Soybean	nucleus	92.43	92.43
KRH51701	Soybean	nucleus	91.98	92.19
KRH41834	Soybean	cytosol	90.87	91.69
Zm00001d008216_P002	Maize	cytosol	48.78	91.63
KRH60536	Soybean	endoplasmic reticulum	90.65	91.46
KRH61035	Soybean	nucleus	91.31	91.31
KRH17435	Soybean	nucleus	92.2	90.59
KRH41169	Soybean	cytosol	88.86	89.66
KRH59870	Soybean	endoplasmic reticulum	88.42	89.01
KRH04356	Soybean	cytosol	26.5	47.41
KRG91143	Soybean	nucleus	42.76	42.76
KRH58942	Soybean	nucleus	42.76	42.76
KRH42841	Soybean	cytosol, nucleus	42.76	42.67
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	42.09	42.66
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	42.76	42.57
KRH35640	Soybean	cytosol, nucleus	42.54	42.54
KRH52851	Soybean	cytosol, nucleus	42.54	42.26
KRH62139	Soybean	nucleus	42.54	42.26
KRH77187	Soybean	endoplasmic reticulum	42.32	42.13
KRH58181	Soybean	nucleus	42.09	42.0
KRH28301	Soybean	cytosol, endoplasmic reticulum	42.09	41.91
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	41.2	41.67
KRH04357	Soybean	cytosol	13.59	35.88
KRH68880	Soybean	endoplasmic reticulum	34.3	32.49
KRG97131	Soybean	cytosol	34.3	32.49

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100816898	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02000490
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G109300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
UniProt:I1J752	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH75786	ProteinID:KRH75786
ProteinID:KRH75786.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00023373E3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:37231894..37234905

Molecular Weight (calculated)

50617.8 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.392

Length

449 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYGGDS ELQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALSVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPHNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEDEYEEEEE EEEYGQHDM

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.