CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	99.1	97.34
KRH42841	Soybean	cytosol, nucleus	94.36	92.89
KRH58942	Soybean	nucleus	94.13	92.87
TraesCS4D01G242700.1	Wheat	cytosol	92.78	91.54
TraesCS4B01G243100.1	Wheat	cytosol	92.78	91.54
Zm00001d048065_P002	Maize	cytosol, mitochondrion	92.55	91.52
HORVU4Hr1G067370.1	Barley	cytosol	92.55	91.31
TraesCS4A01G065700.1	Wheat	cytosol	92.55	91.31
KRH04356	Soybean	cytosol	51.69	91.24
EER92631	Sorghum	cytosol	92.1	91.07
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	91.2	90.99
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	91.2	89.98
KRG91143	Soybean	nucleus	90.74	89.53
KRH35640	Soybean	cytosol, nucleus	90.52	89.31
KRH62139	Soybean	nucleus	90.52	88.72
KRH58181	Soybean	nucleus	90.07	88.67
KRH52851	Soybean	cytosol, nucleus	90.29	88.5
KRH77187	Soybean	endoplasmic reticulum	89.84	88.25
KRH28301	Soybean	cytosol, endoplasmic reticulum	89.84	88.25
KRH04357	Soybean	cytosol	32.73	85.29
KRH11812	Soybean	nucleus	42.66	42.38
KRH36829	Soybean	nucleus	42.66	42.38
KRH65977	Soybean	nucleus	42.66	42.09
KRH75786	Soybean	nucleus	42.66	42.09
KRH58404	Soybean	nucleus	41.99	42.08
KRH66728	Soybean	nucleus	42.44	41.87
KRG95065	Soybean	plasma membrane	42.44	41.78
KRH42279	Soybean	cytosol	41.53	41.53
KRH41834	Soybean	cytosol	41.53	41.35
KRH60536	Soybean	endoplasmic reticulum	41.53	41.35
KRH51701	Soybean	nucleus	41.76	41.29
KRH05958	Soybean	nucleus	41.76	41.2
KRH61035	Soybean	nucleus	41.76	41.2
KRG91525	Soybean	nucleus	41.53	41.07
KRH35301	Soybean	nucleus	41.53	41.07
KRH17435	Soybean	nucleus	41.76	40.48
KRH59870	Soybean	endoplasmic reticulum	40.18	39.91
KRH41169	Soybean	cytosol	39.95	39.78
KRH68880	Soybean	endoplasmic reticulum	30.7	28.69
KRG97131	Soybean	cytosol	30.47	28.48

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100784487	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EMBL:ACUP02009858
InterPro:Alpha_tubulin	InterPro:Beta-tubulin_BS	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G040100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	UniProt:I1ML11
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EnsemblPlants:KRH06693	ProteinID:KRH06693	ProteinID:KRH06693.1
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF137	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000233EA77	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:-:3757811..3760899

Molecular Weight (calculated)

49087.4 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.113

Length

443 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI NPDGTMPSDT SVGIAHDAFN TFFSETGFGK HVPRALFVDL EPSVIDEVRT GPYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GREIVELCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: VVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITSAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVSNIKTKRT VQFVDWCPTG FKCGINYQPP TVVPAGDLAK VQRAVCMISN NTAVAEVFAR IDYKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGE EEE

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.