CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048065_P002	Maize	cytosol, mitochondrion	98.66	98.66
TraesCS4A01G065700.1	Wheat	cytosol	96.88	96.66
HORVU4Hr1G067370.1	Barley	cytosol	96.65	96.44
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	96.65	96.44
TraesCS4B01G243100.1	Wheat	cytosol	96.65	96.44
TraesCS4D01G242700.1	Wheat	cytosol	96.65	96.44
CDY42295	Canola	cytosol	92.63	92.22
CDY42294	Canola	cytosol	92.63	92.22
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.07	92.1
CDX88875	Canola	cytosol	92.41	92.0
CDX70890	Canola	cytosol	92.41	92.0
Bra020062.1-P	Field mustard	cytosol	92.41	92.0
CDY44941	Canola	cytosol	92.19	91.78
CDY44942	Canola	cytosol	92.19	91.78
CDX92501	Canola	cytosol	91.96	91.56
CDX92502	Canola	cytosol	91.96	91.56
Bra002261.1-P	Field mustard	cytosol	91.96	91.56
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	91.96	91.35
Bra006517.1-P	Field mustard	cytosol	91.74	91.33
KXG36544	Sorghum	cytosol	91.74	91.33
Bra020061.1-P	Field mustard	cytosol	90.85	90.44
AT1G64740.1	Thale cress	cytosol	90.18	89.78
Bra002260.1-P	Field mustard	cytosol	82.14	89.76
KXG37668	Sorghum	cytosol	88.62	88.03
KXG37669	Sorghum	cytosol	88.62	88.03
VIT_08s0007g07260.t01	Wine grape	cytosol	85.04	85.43
EER93374	Sorghum	cytosol	85.49	85.11
OQU78051	Sorghum	cytosol	59.15	65.59
EES04582	Sorghum	cytosol	41.52	41.7
KXG32297	Sorghum	cytosol	41.29	41.48
EES01623	Sorghum	cytosol	41.29	41.39
EER93354	Sorghum	cytosol	41.07	41.35
EER90205	Sorghum	cytosol	41.07	41.26
EER95686	Sorghum	cytosol	40.62	40.81
EER93713	Sorghum	cytosol	39.06	39.33
OQU78011	Sorghum	cytosol	34.38	36.07
EES19069	Sorghum	cytosol	31.25	29.85

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:8056877	InterPro:Alpha_tubulin
InterPro:Beta-tubulin_BS	UniProt:C5WSQ3	ncoils:Coil	EnsemblPlants:EER92631	ProteinID:EER92631	ProteinID:EER92631.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF189	SMART:SM00864	SMART:SM00865
EnsemblPlantsGene:SORBI_3001G453700	SUPFAM:SSF52490	SUPFAM:SSF55307	unigene:Sbi.3742	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI0001A8280B	RefSeq:XP_002465633.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:73014085..73017769

Molecular Weight (calculated)

49842.1 Da

IEP (calculated)

4.893

GRAVY (calculated)

-0.163

Length

448 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGLMPSDN SVGVARDAFN TFFSETSAGK HVPRALFVDL EPTVIDEVKT GAYRQLFHPE QLISHKEDAA
101: NNFARGHYTV GREVVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGRKSKLGFT IYPSPQISTA VVEPYNSVLS THSLIEHTDV
201: VVLLDNEAIY DICKRSLDIE RPTYTNLNRL ISQVISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPIISVEK AYHEQHSVPE ITNSVFEPSS
301: VMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVHSIKTKRA VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDRKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEVE DDDEEAEY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.