Factsheet for VIT_08s0007g07260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G037560.2	Barley	cytosol	73.99	90.41
VIT_06s0004g00480.t01	Wine grape	cytosol	90.36	89.75
CDY42294	Canola	cytosol	90.13	89.33
CDY42295	Canola	cytosol	90.13	89.33
Bra020062.1-P	Field mustard	cytosol	89.91	89.11
CDY44941	Canola	cytosol	89.91	89.11
CDY44942	Canola	cytosol	89.91	89.11
Bra002261.1-P	Field mustard	cytosol	89.69	88.89
CDX70890	Canola	cytosol	89.69	88.89
CDX88875	Canola	cytosol	89.69	88.89
CDX92501	Canola	cytosol	89.69	88.89
CDX92502	Canola	cytosol	89.69	88.89
Bra006517.1-P	Field mustard	cytosol	89.01	88.22
Bra020061.1-P	Field mustard	cytosol	89.01	88.22
VIT_00s0373g00010.t01	Wine grape	cytosol	63.23	87.58
Bra002260.1-P	Field mustard	cytosol	80.27	87.32
VIT_03s0088g00380.t01	Wine grape	cytosol	86.32	85.56
VIT_00s1322g00010.t01	Wine grape	cytosol	52.69	85.45
VIT_18s0001g08250.t01	Wine grape	cytosol	86.1	85.14
KRH08505	Soybean	cytosol, endoplasmic reticulum, nucleus	84.75	85.14
AT1G64740.1	Thale cress	cytosol	85.87	85.11
EER92631	Sorghum	cytosol	85.43	85.04
VIT_14s0108g00440.t01	Wine grape	cytosol	85.65	84.89
Zm00001d048065_P002	Maize	cytosol, mitochondrion	85.2	84.82
HORVU4Hr1G067370.1	Barley	cytosol	85.2	84.63
TraesCS4B01G243100.1	Wheat	cytosol	85.2	84.63
TraesCS4A01G065700.1	Wheat	cytosol	85.2	84.63
TraesCS4D01G242700.1	Wheat	cytosol	85.2	84.63
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	84.75	84.19
VIT_10s0003g05320.t01	Wine grape	cytosol	41.7	41.8
VIT_08s0040g00980.t01	Wine grape	cytosol	41.7	41.61
VIT_06s0009g02020.t01	Wine grape	cytosol	41.48	41.48
VIT_06s0004g05870.t01	Wine grape	cytosol	41.48	41.48
VIT_02s0025g03540.t01	Wine grape	cytosol	41.26	41.44
VIT_08s0007g01630.t01	Wine grape	cytosol	41.26	41.16
VIT_02s0025g03680.t01	Wine grape	cytosol	41.26	41.16
VIT_16s0050g00380.t01	Wine grape	cytosol	41.26	40.98
VIT_17s0000g02450.t01	Wine grape	cytosol	40.36	40.45
VIT_18s0001g14360.t01	Wine grape	cytosol	40.58	40.4
VIT_15s0046g01350.t01	Wine grape	cytosol	29.82	28.06
Os03t0780800-01	Rice	cytosol	0.9	1.69

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100258974	wikigene:100258974	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Alpha_tubulin	ProteinID:CBI29952	ProteinID:CBI29952.3	ncoils:Coil	UniProt:D7TI76	EMBL:FN595991
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100258974
wikigene:LOC100258974	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001983EDB	ArrayExpress:VIT_08s0007g07260	EnsemblPlantsGene:VIT_08s0007g07260	EnsemblPlants:VIT_08s0007g07260.t01
RefSeq:XP_002281667	RefSeq:XP_002281667.1	SEG:seg	:	:	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:D7TI76]

Coordinates

chr8:-:20881458..20884063

Molecular Weight (calculated)

49300.7 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.081

Length

446 amino acids

Sequence
(BLAST)

001: MREVISIHIG QAGIQVGNEC WELFCLEHGI QSDGMMPSGT SNGAGHDAFN TFFSETDAGK YVPRAVFVDL EPSVIDEVRT GVYKQLFHPE QLISGKEDAA
101: NNYARGHYTV GKDIVDLCLD RVRKLADVCS GLQGFLVFNA VGGGTGSGFG SLVLERLSAD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDLE RPTYTNLNRL ISQIISSITT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK VYHEQLSVPE ITTAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA SVANIKTKRT VQFVDWCPTG FKCGINYQAP TAVPGAELAK VKRAVCMISN NTAVAEVFER ITHKFDLMYV
401: KRAFVHWYVG EGMEEGEFSE AREDLATLEK DYEEVVAEAI DIEAEE

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.