Factsheet for VIT_06s0004g05870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95686	Sorghum	cytosol	95.96	95.96
Os03t0105600-01	Rice	plasma membrane	95.74	95.53
TraesCS5A01G534300.1	Wheat	cytosol	95.74	95.53
VIT_02s0025g03680.t01	Wine grape	cytosol	95.74	95.53
VIT_08s0007g01630.t01	Wine grape	cytosol	95.74	95.53
TraesCSU01G137900.1	Wheat	cytosol	95.74	95.31
PGSC0003DMT400028800	Potato	cytosol	95.29	95.08
TraesCS4B01G366500.1	Wheat	cytosol	95.52	94.88
Solyc10g086760.1.1	Tomato	nucleus	95.29	94.87
PGSC0003DMT400049212	Potato	cytosol	95.07	94.64
VIT_16s0050g00380.t01	Wine grape	cytosol	95.07	94.43
VIT_10s0003g05320.t01	Wine grape	cytosol	94.17	94.38
VIT_06s0009g02020.t01	Wine grape	cytosol	94.17	94.17
VIT_08s0040g00980.t01	Wine grape	cytosol	93.95	93.74
Solyc10g085020.1.1	Tomato	nucleus	95.07	93.39
Zm00001d040509_P001	Maize	cytosol	46.41	93.24
VIT_17s0000g02450.t01	Wine grape	cytosol	92.6	92.81
VIT_18s0001g14360.t01	Wine grape	cytosol	93.05	92.63
VIT_02s0025g03540.t01	Wine grape	cytosol	90.36	90.77
Zm00001d008216_P002	Maize	cytosol	47.53	88.7
VIT_00s0373g00010.t01	Wine grape	cytosol	32.96	45.65
VIT_14s0108g00440.t01	Wine grape	cytosol	43.95	43.56
VIT_03s0088g00380.t01	Wine grape	cytosol	43.27	42.89
VIT_18s0001g08250.t01	Wine grape	cytosol	43.27	42.79
VIT_06s0004g00480.t01	Wine grape	cytosol	42.6	42.32
VIT_08s0007g07260.t01	Wine grape	cytosol	41.48	41.48
VIT_00s1322g00010.t01	Wine grape	cytosol	24.66	40.0
VIT_15s0046g01350.t01	Wine grape	cytosol	34.98	32.91

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100260443	wikigene:100260443	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CCB43515	ProteinID:CCB43515.1	ncoils:Coil	UniProt:F6GUV7
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
EntrezGene:LOC100260443	wikigene:LOC100260443	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF178	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC53931	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015C7ECF
ArrayExpress:VIT_06s0004g05870	EnsemblPlantsGene:VIT_06s0004g05870	EnsemblPlants:VIT_06s0004g05870.t01	unigene:Vvi.19019	unigene:Vvi.5278	RefSeq:XP_002281289
RefSeq:XP_002281289.1	SEG:seg	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6GUV7]

Coordinates

chr6:-:6589857..6591478

Molecular Weight (calculated)

50277.5 Da

IEP (calculated)

4.524

GRAVY (calculated)

-0.387

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGKYHGDS EIQLERINVY YNEAGGGRFV PRAVLMDLEP GVMDSVRSGQ YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEE EEYEQM

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.