Factsheet for VIT_16s0050g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91525	Soybean	nucleus	98.0	98.21
KRH35301	Soybean	nucleus	98.0	98.21
AT5G23860.1	Thale cress	cytosol	97.33	97.33
Os03t0105600-01	Rice	plasma membrane	96.44	96.87
VIT_02s0025g03680.t01	Wine grape	cytosol	96.44	96.87
EER95686	Sorghum	cytosol	96.21	96.86
GSMUA_Achr1P17290_001	Banana	cytosol	79.51	96.75
TraesCS5A01G534300.1	Wheat	cytosol	96.21	96.64
TraesCSU01G137900.1	Wheat	cytosol	96.21	96.43
TraesCS4B01G366500.1	Wheat	cytosol	95.99	95.99
VIT_08s0007g01630.t01	Wine grape	cytosol	95.55	95.97
VIT_06s0009g02020.t01	Wine grape	cytosol	95.32	95.96
VIT_08s0040g00980.t01	Wine grape	cytosol	95.1	95.53
Zm00001d040509_P001	Maize	cytosol	47.22	95.5
VIT_06s0004g05870.t01	Wine grape	cytosol	94.43	95.07
VIT_10s0003g05320.t01	Wine grape	cytosol	93.1	93.93
VIT_17s0000g02450.t01	Wine grape	cytosol	92.65	93.48
VIT_18s0001g14360.t01	Wine grape	cytosol	92.65	92.86
VIT_02s0025g03540.t01	Wine grape	cytosol	91.09	92.12
Zm00001d008216_P002	Maize	cytosol	48.33	90.8
VIT_00s0373g00010.t01	Wine grape	cytosol	31.85	44.41
VIT_14s0108g00440.t01	Wine grape	cytosol	42.32	42.22
VIT_03s0088g00380.t01	Wine grape	cytosol	41.87	41.78
VIT_18s0001g08250.t01	Wine grape	cytosol	41.87	41.69
VIT_06s0004g00480.t01	Wine grape	cytosol	41.43	41.43
VIT_08s0007g07260.t01	Wine grape	cytosol	40.98	41.26
VIT_00s1322g00010.t01	Wine grape	cytosol	24.05	39.27
VIT_15s0046g01350.t01	Wine grape	cytosol	34.52	32.7

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100253327	wikigene:100253327	EntrezGene:100261736	wikigene:100261736	MapMan:20.1.1.2
Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CCB47875	ProteinID:CCB47875.1
ncoils:Coil	UniProt:F6H6N2	EMBL:FN595243	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100253327	wikigene:LOC100253327	EntrezGene:LOC100261736	wikigene:LOC100261736
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
TIGR:TC58912	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015CDEFE	ArrayExpress:VIT_16s0050g00380	EnsemblPlantsGene:VIT_16s0050g00380
EnsemblPlants:VIT_16s0050g00380.t01	unigene:Vvi.15749	unigene:Vvi.24014	unigene:Vvi.8747	RefSeq:XP_002267380	RefSeq:XP_002267380.1
RefSeq:XP_002272248	RefSeq:XP_002272248.2	SEG:seg	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6H6N2]

Coordinates

chr16:+:17206698..17208766

Molecular Weight (calculated)

50555.7 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.378

Length

449 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGDT ELQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEDGYEYEDE EEEEELQEA

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.