Factsheet for VIT_06s0009g02020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g00980.t01	Wine grape	cytosol	97.98	97.76
VIT_02s0025g03680.t01	Wine grape	cytosol	96.41	96.2
VIT_17s0000g02450.t01	Wine grape	cytosol	95.52	95.73
VIT_16s0050g00380.t01	Wine grape	cytosol	95.96	95.32
VIT_08s0007g01630.t01	Wine grape	cytosol	95.07	94.85
VIT_06s0004g05870.t01	Wine grape	cytosol	94.17	94.17
VIT_10s0003g05320.t01	Wine grape	cytosol	93.95	94.16
VIT_18s0001g14360.t01	Wine grape	cytosol	93.95	93.53
VIT_02s0025g03540.t01	Wine grape	cytosol	91.48	91.89
GSMUA_Achr5P21740_001	Banana	cytosol	92.15	81.71
VIT_00s0373g00010.t01	Wine grape	cytosol	32.96	45.65
VIT_14s0108g00440.t01	Wine grape	cytosol	43.27	42.89
VIT_03s0088g00380.t01	Wine grape	cytosol	43.05	42.67
VIT_18s0001g08250.t01	Wine grape	cytosol	43.05	42.57
VIT_06s0004g00480.t01	Wine grape	cytosol	42.83	42.54
VIT_08s0007g07260.t01	Wine grape	cytosol	41.48	41.48
VIT_00s1322g00010.t01	Wine grape	cytosol	23.99	38.91
VIT_15s0046g01350.t01	Wine grape	cytosol	34.75	32.7

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100265052	wikigene:100265052	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
ProteinID:AAF25842	ProteinID:AAF25842.1	EMBL:AF196485	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CCB49126
ProteinID:CCB49126.1	ncoils:Coil	UniProt:F6HAG6	EMBL:FN595504	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100265052	wikigene:LOC100265052	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF106	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC55048
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015CA018	ArrayExpress:VIT_06s0009g02020	EnsemblPlantsGene:VIT_06s0009g02020	EnsemblPlants:VIT_06s0009g02020.t01
unigene:Vvi.6656	RefSeq:XP_002270069	RefSeq:XP_002270069.1	SEG:seg	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6HAG6]

Coordinates

chr6:+:14278486..14281763

Molecular Weight (calculated)

50248.4 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.378

Length

446 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVVCDEHGI DPTGRYTGNS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEIDYEDEE EPEQDM

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.