Factsheet for VIT_18s0001g14360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02390.t01
VIT_14s0036g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20010.1	VIT_04s0023g02390.t01	AT3G50960.1	18390592
AT1G20010.1	VIT_14s0036g00970.t01	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G75780.1	Thale cress	cytosol	95.98	96.2
Bra015815.1-P	Field mustard	cytosol	95.98	96.2
CDX73198	Canola	cytosol	95.98	96.2
CDX87664	Canola	cytosol	95.98	96.2
Solyc04g081490.2.1	Tomato	nucleus	95.54	94.9
PGSC0003DMT400025739	Potato	cytosol	95.54	94.9
VIT_06s0009g02020.t01	Wine grape	cytosol	93.53	93.95
VIT_10s0003g05320.t01	Wine grape	cytosol	93.3	93.93
KRH05958	Soybean	nucleus	93.97	93.76
AT1G20010.1	Thale cress	cytosol	93.97	93.76
KRH51701	Soybean	nucleus	93.75	93.75
VIT_08s0040g00980.t01	Wine grape	cytosol	93.53	93.74
KRH61035	Soybean	nucleus	93.53	93.32
VIT_02s0025g03680.t01	Wine grape	cytosol	92.86	93.06
VIT_06s0004g05870.t01	Wine grape	cytosol	92.63	93.05
VIT_17s0000g02450.t01	Wine grape	cytosol	92.41	93.03
VIT_08s0007g01630.t01	Wine grape	cytosol	92.63	92.84
VIT_16s0050g00380.t01	Wine grape	cytosol	92.86	92.65
Solyc12g089310.1.1	Tomato	nucleus	93.08	92.46
KRH17435	Soybean	nucleus	93.75	91.9
PGSC0003DMT400075425	Potato	cytosol	92.41	91.8
VIT_02s0025g03540.t01	Wine grape	cytosol	90.18	90.99
VIT_00s0373g00010.t01	Wine grape	cytosol	31.92	44.41
VIT_14s0108g00440.t01	Wine grape	cytosol	42.41	42.22
VIT_18s0001g08250.t01	Wine grape	cytosol	42.19	41.91
VIT_03s0088g00380.t01	Wine grape	cytosol	41.96	41.78
VIT_06s0004g00480.t01	Wine grape	cytosol	41.07	40.98
VIT_08s0007g07260.t01	Wine grape	cytosol	40.4	40.58
VIT_00s1322g00010.t01	Wine grape	cytosol	24.55	40.0
VIT_15s0046g01350.t01	Wine grape	cytosol	35.27	33.33

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100259087	wikigene:100259087	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CCB46040	ProteinID:CCB46040.1	ncoils:Coil	UniProt:F6H1L2
EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
EntrezGene:LOC100259087	wikigene:LOC100259087	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF116	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC61079	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015C759A
ArrayExpress:VIT_18s0001g14360	EnsemblPlantsGene:VIT_18s0001g14360	EnsemblPlants:VIT_18s0001g14360.t01	unigene:Vvi.16884	unigene:Vvi.304	RefSeq:XP_002275306
RefSeq:XP_002275306.1	SEG:seg	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6H1L2]

Coordinates

chr18:-:12337145..12340985

Molecular Weight (calculated)

50256.3 Da

IEP (calculated)

4.508

GRAVY (calculated)

-0.396

Length

448 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDG SSDLQLERIN VYYNEASGGR YVPRAVLMDL EPGTMDSIRS GPYGQIFRPD NFVFGQSGAG
101: NNWAKGHYTE GAELIDAVLD VVRKEAENCD CMQGFQVCHS LGGGTGSGMG TLLISKMREE YPDRMMLTFS VFPSPKVSDT VVEPYNATLS VHQLVENADE
201: CMVLDNEALY DICFRTLKLS TPSFGDLNHL ISATMSGVTC CLRFPGQLNS DLRKLAVNLI PFPRLHFFMV GFAPLTSRGS QQYISLTVPE LTQQMWDAKN
301: MMCAADPRHG RYLTASAMFR GKMSTKEVDE QMINVQNKNS SYFVEWIPNN VKSSVCDIPP RGLKMASTFV GNSTSIQEMF RRVSEQFTAM FRRKAFLHWY
401: TGEGMDEMEF TEAESNMNDL VSEYQQYQDA TADDEGEYEE GPEENYEA

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.