Factsheet for VIT_10s0003g05320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02390.t01
VIT_14s0036g00970.t01
VIT_15s0021g01180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	VIT_15s0021g01180.t01	AT2G30410.1	20638386
AT5G44340.1	VIT_04s0023g02390.t01	AT3G50960.1	18390592
AT5G44340.1	VIT_14s0036g00970.t01	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58404	Soybean	nucleus	97.3	97.96
KRH11812	Soybean	nucleus	97.98	97.76
KRH36829	Soybean	nucleus	97.98	97.76
GSMUA_Achr11P...	Banana	cytosol	76.85	97.71
Zm00001d036626_P001	Maize	cytosol	49.66	97.36
KRH42279	Soybean	cytosol	96.85	97.29
GSMUA_Achr2P01410_001	Banana	cytosol	85.17	97.18
GSMUA_Achr5P26680_001	Banana	cytosol	84.72	97.16
EES04582	Sorghum	cytosol	97.3	97.09
Os06t0671900-01	Rice	plasma membrane	97.3	97.09
GSMUA_Achr3P23490_001	Banana	cytosol	81.35	97.05
CDY31638	Canola	cytosol	96.63	96.85
GSMUA_Achr8P07060_001	Banana	cytosol	84.49	96.66
Os02t0167300-01	Rice	plasma membrane	97.08	96.64
EER90205	Sorghum	cytosol	96.85	96.64
Os03t0780600-01	Rice	plastid	96.18	96.4
CDX84283	Canola	cytosol	96.4	96.19
EER93354	Sorghum	cytosol	96.18	96.18
TraesCS6D01G130500.2	Wheat	golgi	96.18	96.18
TraesCS6B01G169300.1	Wheat	cytosol	95.96	96.17
Zm00001d046996_P001	Maize	cytosol	49.89	96.1
GSMUA_Achr5P00290_001	Banana	cytosol	84.72	95.93
HORVU6Hr1G027620.1	Barley	plasma membrane	95.96	95.74
Zm00001d015348_P002	Maize	plastid	95.51	95.72
TraesCS5D01G424100.1	Wheat	cytosol	95.51	95.51
TraesCS5B01G418700.1	Wheat	golgi	95.51	95.51
TraesCS5A01G416400.1	Wheat	cytosol	95.06	95.27
Zm00001d013139_P001	Maize	cytosol	62.47	94.88
TraesCS7A01G466600.1	Wheat	golgi	95.06	94.84
TraesCS7D01G454200.1	Wheat	cytosol	95.06	94.84
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	94.83	94.62
CDX94014	Canola	cytosol	94.83	94.62
AT5G44340.1	Thale cress	cytosol	94.38	94.59
VIT_02s0025g03680.t01	Wine grape	cytosol	94.83	94.41
Bra020912.1-P	Field mustard	cytosol	94.61	94.39
CDX98679	Canola	cytosol	94.61	94.39
AT4G20890.1	Thale cress	cytosol	94.16	94.37
VIT_06s0004g05870.t01	Wine grape	cytosol	94.38	94.17
CDY31428	Canola	cytosol	94.38	94.17
CDX76444	Canola	cytosol	94.38	94.17
VIT_06s0009g02020.t01	Wine grape	cytosol	94.16	93.95
Bra038795.1-P	Field mustard	cytosol	93.93	93.93
Zm00001d034022_P001	Maize	cytosol	55.28	93.89
VIT_08s0040g00980.t01	Wine grape	cytosol	94.16	93.74
VIT_08s0007g01630.t01	Wine grape	cytosol	94.16	93.74
CDX82788	Canola	cytosol	93.93	93.72
CDX79013	Canola	cytosol	93.93	93.72
Bra027544.1-P	Field mustard	cytosol	93.71	93.71
CDX96965	Canola	cytosol	93.71	93.71
VIT_17s0000g02450.t01	Wine grape	cytosol	93.71	93.71
Bra039506.1-P	Field mustard	cytosol	93.71	93.5
CDY14924	Canola	cytosol	93.71	93.5
CDY13108	Canola	cytosol	93.48	93.48
CDY60599	Canola	cytosol	93.48	93.48
VIT_18s0001g14360.t01	Wine grape	cytosol	93.93	93.3
CDY69221	Canola	cytosol	93.26	93.26
VIT_16s0050g00380.t01	Wine grape	cytosol	93.93	93.1
Bra033737.1-P	Field mustard	cytosol	93.03	93.03
CDY49002	Canola	cytosol	93.03	93.03
Bra013481.1-P	Field mustard	cytosol	92.81	92.6
GSMUA_Achr6P04600_001	Banana	cytosol	87.87	92.44
VIT_02s0025g03540.t01	Wine grape	cytosol	91.24	91.44
Bra005395.1-P	Field mustard	cytosol	80.9	89.33
GSMUA_Achr6P19990_001	Banana	cytosol	79.33	85.27
HORVU5Hr1G100900.2	Barley	cytosol	95.51	83.99
VIT_00s0373g00010.t01	Wine grape	cytosol	32.81	45.34
VIT_14s0108g00440.t01	Wine grape	cytosol	43.6	43.11
VIT_18s0001g08250.t01	Wine grape	cytosol	43.15	42.57
VIT_03s0088g00380.t01	Wine grape	cytosol	42.92	42.44
VIT_06s0004g00480.t01	Wine grape	cytosol	42.47	42.09
VIT_08s0007g07260.t01	Wine grape	cytosol	41.8	41.7
VIT_00s1322g00010.t01	Wine grape	cytosol	24.94	40.36
VIT_15s0046g01350.t01	Wine grape	cytosol	34.83	32.7

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100259534	wikigene:100259534	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CCB55871	ProteinID:CCB55871.1	ncoils:Coil	UniProt:F6HLZ6
EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
EntrezGene:LOC100259534	wikigene:LOC100259534	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC52448	TIGR:TC57650	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI00015CADA1	ArrayExpress:VIT_10s0003g05320	EnsemblPlantsGene:VIT_10s0003g05320	EnsemblPlants:VIT_10s0003g05320.t01	unigene:Vvi.665	RefSeq:XP_002267304
RefSeq:XP_002267304.1	SEG:seg	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6HLZ6]

Coordinates

chr10:-:9832444..9836840

Molecular Weight (calculated)

50045.2 Da

IEP (calculated)

4.495

GRAVY (calculated)

-0.353

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DNTGKYSGDS DLQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGL FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEYEEEEEE EEITA

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.