Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20890.1 | CDY02064 | AT2G30410.1 | 20638386 |
| AT4G20890.1 | CDY10736 | AT2G30410.1 | 20638386 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79013 | Canola | cytosol | 100.0 | 100.0 |
| CDY31428 | Canola | cytosol | 99.1 | 99.1 |
| Bra013481.1-P | Field mustard | cytosol | 98.88 | 98.88 |
| CDX76444 | Canola | cytosol | 98.88 | 98.88 |
| CDX94014 | Canola | cytosol | 98.65 | 98.65 |
| CDX98679 | Canola | cytosol | 98.43 | 98.43 |
| AT4G20890.1 | Thale cress | cytosol | 97.98 | 98.42 |
| CDX96965 | Canola | cytosol | 95.96 | 96.18 |
| CDY14924 | Canola | cytosol | 95.96 | 95.96 |
| CDY60599 | Canola | cytosol | 95.74 | 95.96 |
| CDY13108 | Canola | cytosol | 95.74 | 95.96 |
| GSMUA_Achr11P... | Banana | cytosol | 74.89 | 95.43 |
| CDY69221 | Canola | cytosol | 95.07 | 95.28 |
| CDY49002 | Canola | cytosol | 94.84 | 95.06 |
| CDY31638 | Canola | cytosol | 93.95 | 94.37 |
| Zm00001d036626_P001 | Maize | cytosol | 47.98 | 94.27 |
| CDX84283 | Canola | cytosol | 94.17 | 94.17 |
| CDY67078 | Canola | cytosol | 83.18 | 94.16 |
| VIT_10s0003g05320.t01 | Wine grape | cytosol | 93.72 | 93.93 |
| Os03t0780600-01 | Rice | plastid | 93.5 | 93.92 |
| KRH58404 | Soybean | nucleus | 93.05 | 93.89 |
| GSMUA_Achr5P26680_001 | Banana | cytosol | 81.61 | 93.81 |
| EES04582 | Sorghum | cytosol | 93.72 | 93.72 |
| KRH11812 | Soybean | nucleus | 93.72 | 93.72 |
| KRH42279 | Soybean | cytosol | 93.05 | 93.68 |
| GSMUA_Achr2P01410_001 | Banana | cytosol | 81.84 | 93.59 |
| GSMUA_Achr3P23490_001 | Banana | cytosol | 78.25 | 93.57 |
| KRH36829 | Soybean | nucleus | 93.5 | 93.5 |
| Os06t0671900-01 | Rice | plasma membrane | 93.5 | 93.5 |
| TraesCS6B01G169300.1 | Wheat | cytosol | 93.05 | 93.47 |
| GSMUA_Achr8P07060_001 | Banana | cytosol | 81.39 | 93.32 |
| TraesCS7A01G466600.1 | Wheat | golgi | 93.27 | 93.27 |
| HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 93.27 | 93.27 |
| TraesCS7D01G454200.1 | Wheat | cytosol | 93.27 | 93.27 |
| EER90205 | Sorghum | cytosol | 93.27 | 93.27 |
| TraesCS6D01G130500.2 | Wheat | golgi | 93.05 | 93.26 |
| EER93354 | Sorghum | cytosol | 93.05 | 93.26 |
| Os02t0167300-01 | Rice | plasma membrane | 93.05 | 92.84 |
| HORVU6Hr1G027620.1 | Barley | plasma membrane | 92.83 | 92.83 |
| TraesCS5B01G418700.1 | Wheat | golgi | 92.6 | 92.81 |
| TraesCS5D01G424100.1 | Wheat | cytosol | 92.6 | 92.81 |
| Zm00001d015348_P002 | Maize | plastid | 92.38 | 92.79 |
| TraesCS5A01G416400.1 | Wheat | cytosol | 92.15 | 92.57 |
| Zm00001d013139_P001 | Maize | cytosol | 60.76 | 92.49 |
| GSMUA_Achr5P00290_001 | Banana | cytosol | 81.39 | 92.37 |
| Zm00001d046996_P001 | Maize | cytosol | 47.76 | 92.21 |
| CDY00319 | Canola | cytosol | 92.83 | 92.0 |
| CDX84345 | Canola | cytosol | 92.83 | 92.0 |
| CDX86102 | Canola | plasma membrane | 92.83 | 92.0 |
| CDY38073 | Canola | cytosol | 92.83 | 92.0 |
| Zm00001d034022_P001 | Maize | cytosol | 54.04 | 91.98 |
| CDX73198 | Canola | cytosol | 92.15 | 91.95 |
| CDX87664 | Canola | cytosol | 92.15 | 91.95 |
| CDY53366 | Canola | cytosol | 92.38 | 91.76 |
| CDX80390 | Canola | cytosol | 92.38 | 91.76 |
| CDY21784 | Canola | cytosol | 87.67 | 91.57 |
| CDX99087 | Canola | cytosol | 87.67 | 91.57 |
| CDX97877 | Canola | cytosol | 92.15 | 91.54 |
| CDY45452 | Canola | cytosol | 92.15 | 91.54 |
| CDY51360 | Canola | cytosol | 92.15 | 91.54 |
| CDX88051 | Canola | cytosol | 87.22 | 91.31 |
| GSMUA_Achr6P04600_001 | Banana | cytosol | 84.98 | 89.6 |
| CDX68422 | Canola | cytosol | 57.62 | 89.55 |
| CDX69693 | Canola | cytosol | 91.93 | 88.94 |
| CDX97180 | Canola | cytosol | 91.93 | 85.24 |
| GSMUA_Achr6P19990_001 | Banana | cytosol | 76.68 | 82.61 |
| HORVU5Hr1G100900.2 | Barley | cytosol | 92.6 | 81.62 |
| CDY25017 | Canola | cytosol | 39.91 | 43.41 |
| CDY66630 | Canola | cytosol | 41.48 | 42.53 |
| CDY50974 | Canola | cytosol | 42.83 | 42.44 |
| CDY45043 | Canola | cytosol | 42.83 | 42.44 |
| CDY28123 | Canola | cytosol | 42.83 | 42.44 |
| CDY03583 | Canola | cytosol | 42.83 | 42.44 |
| CDY42294 | Canola | cytosol | 42.15 | 41.78 |
| CDY42295 | Canola | cytosol | 42.15 | 41.78 |
| CDX92502 | Canola | cytosol | 41.93 | 41.56 |
| CDX92501 | Canola | cytosol | 41.93 | 41.56 |
| CDY44941 | Canola | cytosol | 41.93 | 41.56 |
| CDY44942 | Canola | cytosol | 41.93 | 41.56 |
| CDX88875 | Canola | cytosol | 41.7 | 41.33 |
| CDX70890 | Canola | cytosol | 41.7 | 41.33 |
| CDY29334 | Canola | cytosol | 39.91 | 41.3 |
| CDY35856 | Canola | cytosol | 11.44 | 34.23 |
| CDX71723 | Canola | cytosol | 34.75 | 32.77 |
| CDY11370 | Canola | cytosol | 34.75 | 32.77 |
| CDY46272 | Canola | cytosol | 19.06 | 29.41 |
| CDY05559 | Canola | mitochondrion | 30.04 | 26.64 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | GO:A0A078D6C5 | InterPro:Beta-tubulin_BS |
| InterPro:Beta_tubulin | EnsemblPlants:CDX82788 | ProteinID:CDX82788 | ProteinID:CDX82788.1 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00138118001 |
| InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | PFAM:PF00091 | PFAM:PF03953 | PRINTS:PR01161 |
| PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF245 | SMART:SM00864 |
| SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom |
| InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0004EE725E |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g12380D
Coordinates
chrLK031830:+:250541..252321
Molecular Weight (calculated)
50058.2 Da
IEP (calculated)
4.398
GRAVY (calculated)
-0.348
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICGEHAI DPTGQYCGET DLQLERINVY YNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSNP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EYEEEA
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSNP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EYEEEA
001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DQTGQSCGDT DLQLERINVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA
Arabidopsis Description
TUBB9Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UU99]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.