CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06012
EES08806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	EES06012	AT2G30410.1	20638386
AT5G44340.1	EES08806	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	76.91	98.0
EER90205	Sorghum	cytosol	97.98	97.98
KRH11812	Soybean	nucleus	97.98	97.98
KRH36829	Soybean	nucleus	97.98	97.98
KRH58404	Soybean	nucleus	96.86	97.74
GSMUA_Achr5P26680_001	Banana	cytosol	84.98	97.68
HORVU6Hr1G027620.1	Barley	plasma membrane	97.53	97.53
TraesCS6D01G130500.2	Wheat	golgi	97.31	97.53
VIT_10s0003g05320.t01	Wine grape	cytosol	97.09	97.3
EER93354	Sorghum	cytosol	97.09	97.3
TraesCS6B01G169300.1	Wheat	cytosol	96.86	97.3
KRH42279	Soybean	cytosol	96.64	97.29
GSMUA_Achr2P01410_001	Banana	cytosol	84.98	97.18
GSMUA_Achr3P23490_001	Banana	cytosol	80.94	96.78
GSMUA_Achr8P07060_001	Banana	cytosol	84.3	96.66
CDY31638	Canola	cytosol	96.19	96.62
TraesCS7D01G454200.1	Wheat	cytosol	96.41	96.41
TraesCS7A01G466600.1	Wheat	golgi	96.41	96.41
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	96.19	96.19
CDX84283	Canola	cytosol	95.96	95.96
GSMUA_Achr5P00290_001	Banana	cytosol	84.3	95.67
EER95686	Sorghum	cytosol	95.52	95.52
EES01623	Sorghum	cytosol	95.07	94.85
KXG32297	Sorghum	cytosol	94.62	94.62
CDX94014	Canola	cytosol	94.62	94.62
CDY60599	Canola	cytosol	94.39	94.61
Bra020912.1-P	Field mustard	cytosol	94.39	94.39
CDX98679	Canola	cytosol	94.39	94.39
Bra027544.1-P	Field mustard	cytosol	94.17	94.38
CDX96965	Canola	cytosol	94.17	94.38
AT5G44340.1	Thale cress	cytosol	93.95	94.37
AT4G20890.1	Thale cress	cytosol	93.95	94.37
CDX76444	Canola	cytosol	94.17	94.17
Bra039506.1-P	Field mustard	cytosol	94.17	94.17
CDY14924	Canola	cytosol	94.17	94.17
CDY31428	Canola	cytosol	94.17	94.17
CDY13108	Canola	cytosol	93.95	94.16
CDY69221	Canola	cytosol	93.72	93.93
Bra038795.1-P	Field mustard	cytosol	93.72	93.93
CDX82788	Canola	cytosol	93.72	93.72
CDX79013	Canola	cytosol	93.72	93.72
CDY49002	Canola	cytosol	93.5	93.71
Bra033737.1-P	Field mustard	cytosol	93.5	93.71
Bra013481.1-P	Field mustard	cytosol	92.6	92.6
EER93713	Sorghum	cytosol	91.93	92.13
Bra005395.1-P	Field mustard	cytosol	80.72	89.33
GSMUA_Achr6P19990_001	Banana	cytosol	79.37	85.51
OQU78011	Sorghum	cytosol	80.49	84.07
KXG37668	Sorghum	cytosol	43.27	42.79
KXG37669	Sorghum	cytosol	43.05	42.57
KXG36544	Sorghum	cytosol	42.15	41.78
EER93374	Sorghum	cytosol	41.93	41.56
EER92631	Sorghum	cytosol	41.7	41.52
OQU78051	Sorghum	cytosol	30.94	34.16
EES19069	Sorghum	cytosol	34.75	33.05

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:8076107	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	UniProt:C5XVI8	ncoils:Coil	EnsemblPlants:EES04582	ProteinID:EES04582	ProteinID:EES04582.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF245	SMART:SM00864	SMART:SM00865	EnsemblPlantsGene:SORBI_3004G053300	SUPFAM:SSF52490	SUPFAM:SSF55307
unigene:Sbi.18414	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001A855D1	RefSeq:XP_002451606.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:4333392..4336412

Molecular Weight (calculated)

50082.1 Da

IEP (calculated)

4.464

GRAVY (calculated)

-0.364

Length

446 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGKYAGDS DLQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DDEEEYEDEE EEEVAA

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.