Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30410.1 | EER90205 | AT4G20890.1 | 20638386 |
| AT2G30410.1 | EER93354 | AT4G20890.1 | 20638386 |
| AT2G30410.1 | EES04582 | AT4G20890.1 | 20638386 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G038700.1 | Wheat | cytosol | 92.86 | 91.23 |
| TraesCS5B01G028900.1 | Wheat | cytosol | 92.86 | 91.23 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 92.86 | 91.23 |
| Os02t0816500-01 | Rice | cytosol | 71.43 | 88.89 |
| TraesCS6A01G389600.1 | Wheat | mitochondrion | 72.32 | 79.41 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 76.79 | 76.79 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 42.86 | 76.19 |
| KRH22160 | Soybean | cytosol, mitochondrion | 75.89 | 75.22 |
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 75.89 | 75.22 |
| Zm00001d018478_P001 | Maize | extracellular | 97.32 | 74.66 |
| KRH27177 | Soybean | cytosol | 75.89 | 74.56 |
| CDY10736 | Canola | cytosol | 72.32 | 73.64 |
| Bra018315.1-P | Field mustard | cytosol | 72.32 | 73.64 |
| PGSC0003DMT400046252 | Potato | cytosol | 74.11 | 73.45 |
| CDY02064 | Canola | cytosol | 71.43 | 72.73 |
| VIT_15s0021g01180.t01 | Wine grape | cytosol | 75.89 | 72.65 |
| Solyc01g068400.2.1 | Tomato | cytosol | 45.54 | 67.11 |
| Bra022798.1-P | Field mustard | cytosol | 42.86 | 65.75 |
| HORVU5Hr1G007960.1 | Barley | cytosol, plastid | 91.96 | 62.42 |
Protein Annotations
| Gene3D:1.20.58.90 | MapMan:20.3.3.1.1 | EntrezGene:8084711 | UniProt:C5XVW0 | ncoils:Coil | EnsemblPlants:EES06012 |
| ProteinID:EES06012 | ProteinID:EES06012.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0007021 | GO:GO:0007023 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0048487 |
| PFAM:PD010430 | PFAM:PF02970 | PANTHER:PTHR21500 | EnsemblPlantsGene:SORBI_3004G344500 | SUPFAM:SSF46988 | unigene:Sbi.12243 |
| InterPro:TBCA | InterPro:TBCA_sf | UniParc:UPI0001A85C3F | RefSeq:XP_002453036.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:+:67466994..67468778
Molecular Weight (calculated)
12495.9 Da
IEP (calculated)
4.753
GRAVY (calculated)
-0.717
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLRNLKIK TSTCKRIVKE LRSYEKEVEK EAAKTADMKD KGADPYDLKQ QENVLAESRM MVPDCHKRLE TALADLKATL AELKESNEQG AEIGEAESTI
101: AEVEAVVKPT ED
101: AEVEAVVKPT ED
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.