Factsheet for Zm00001d018478_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013139_P001
Zm00001d015348_P002
Zm00001d034022_P001
Zm00001d036626_P001
Zm00001d046996_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30410.1	Zm00001d013139_P001	AT4G20890.1	20638386
AT2G30410.1	Zm00001d015348_P002	AT4G20890.1	20638386
AT2G30410.1	Zm00001d034022_P001	AT4G20890.1	20638386
AT2G30410.1	Zm00001d036626_P001	AT4G20890.1	20638386
AT2G30410.1	Zm00001d046996_P001	AT4G20890.1	20638386

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06012	Sorghum	cytosol	74.66	97.32
TraesCS5D01G038700.1	Wheat	cytosol	70.55	90.35
TraesCS5B01G028900.1	Wheat	cytosol	70.55	90.35
TraesCS5A01G030500.1	Wheat	cytosol	70.55	90.35
Os02t0816500-01	Rice	cytosol	54.79	88.89
TraesCS6A01G389600.1	Wheat	mitochondrion	55.48	79.41
GSMUA_Achr1P20090_001	Banana	cytosol, mitochondrion	59.59	77.68
HORVU6Hr1G090650.2	Barley	cytosol	32.88	76.19
KRH27177	Soybean	cytosol	58.9	75.44
KRH22160	Soybean	cytosol, mitochondrion	57.53	74.34
AT2G30410.1	Thale cress	cytosol, mitochondrion	56.85	73.45
PGSC0003DMT400046252	Potato	cytosol	56.85	73.45
Bra018315.1-P	Field mustard	cytosol	54.79	72.73
CDY10736	Canola	cytosol	54.79	72.73
CDY02064	Canola	cytosol	54.11	71.82
VIT_15s0021g01180.t01	Wine grape	cytosol	57.53	71.79
Solyc01g068400.2.1	Tomato	cytosol	35.62	68.42
Bra022798.1-P	Field mustard	cytosol	32.19	64.38
HORVU5Hr1G007960.1	Barley	cytosol, plastid	69.86	61.82

Protein Annotations

MapMan:20.3.3.1.1	UniProt:A0A1D6HPC3	ProteinID:AQK76124.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005856	GO:GO:0005874	GO:GO:0007021	GO:GO:0007023	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0048487	PFAM:PD010430	PFAM:PF02970	SUPFAM:SSF46988	InterPro:TBCA
InterPro:TBCA_sf	UniParc:UPI0008442548	EnsemblPlantsGene:Zm00001d018478	EnsemblPlants:Zm00001d018478_P001	EnsemblPlants:Zm00001d018478_T001	SEG:seg

Description

Tubulin-folding cofactor A

Coordinates

chr5:+:221516602..221518161

Molecular Weight (calculated)

16413.8 Da

IEP (calculated)

6.132

GRAVY (calculated)

-0.394

Length

146 amino acids

Sequence
(BLAST)

001: MTTLRNLKIK TSTCKRIVKE LRSYEKEVEK EAAKTADMKE KGADPYDLKQ QVLTGPLILR AFFYHYFFSV TELTHSALVI AKHTKENVLA ESRMMVPDCH
101: KRLETALADL KATLAELKES NEQGAEIGEA ESTIAEVEAV VKPAED

Best Arabidopsis Sequence Match ( AT2G30410.1 )
(BLAST)

001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA

Arabidopsis Description

TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.