Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30410.1 | PGSC0003DMT400063187 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g068400.2.1 | Tomato | cytosol | 66.37 | 98.68 |
| Os02t0816500-01 | Rice | cytosol | 64.6 | 81.11 |
| KRH27177 | Soybean | cytosol | 80.53 | 79.82 |
| AT2G30410.1 | Thale cress | cytosol, mitochondrion | 78.76 | 78.76 |
| KRH22160 | Soybean | cytosol, mitochondrion | 78.76 | 78.76 |
| Bra018315.1-P | Field mustard | cytosol | 73.45 | 75.45 |
| CDY10736 | Canola | cytosol | 73.45 | 75.45 |
| GSMUA_Achr1P20090_001 | Banana | cytosol, mitochondrion | 74.34 | 75.0 |
| CDY02064 | Canola | cytosol | 72.57 | 74.55 |
| VIT_15s0021g01180.t01 | Wine grape | cytosol | 76.99 | 74.36 |
| EES06012 | Sorghum | cytosol | 73.45 | 74.11 |
| TraesCS5A01G030500.1 | Wheat | cytosol | 73.45 | 72.81 |
| TraesCS5B01G028900.1 | Wheat | cytosol | 73.45 | 72.81 |
| TraesCS5D01G038700.1 | Wheat | cytosol | 73.45 | 72.81 |
| TraesCS6A01G389600.1 | Wheat | mitochondrion | 58.41 | 64.71 |
| Bra022798.1-P | Field mustard | cytosol | 41.59 | 64.38 |
| Zm00001d018478_P001 | Maize | extracellular | 73.45 | 56.85 |
| HORVU6Hr1G090650.2 | Barley | cytosol | 30.97 | 55.56 |
| HORVU5Hr1G007960.1 | Barley | cytosol, plastid | 72.57 | 49.7 |
Protein Annotations
| Gene3D:1.20.58.90 | EntrezGene:102586133 | MapMan:20.3.3.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0007021 | GO:GO:0007023 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0048487 | UniProt:M1BIV0 | PFAM:PD010430 | PFAM:PF02970 | EnsemblPlantsGene:PGSC0003DMG400017954 | PGSC:PGSC0003DMG400017954 |
| EnsemblPlants:PGSC0003DMT400046252 | PANTHER:PTHR21500 | SUPFAM:SSF46988 | InterPro:TBCA | InterPro:TBCA_sf | UniParc:UPI0002964A8F |
| RefSeq:XP_006345359.1 | : | : | : | : | : |
Description
Tubulin-specific chaperone A (Tubulin-folding cofactor A) [Source:PGSC_GENE;Acc:PGSC0003DMG400017954]
Coordinates
chr1:-:64038746..64048231
Molecular Weight (calculated)
13002.5 Da
IEP (calculated)
4.604
GRAVY (calculated)
-0.815
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVRNLKIK TSTCKRILKE LHSYEKEVER EAAKTVDMKE KGADPYDLKQ QENVLAESRM MVPDCRKRLE GALEDLKGTL VELEETDEKQ GPEFEEARNI
101: IADVEKLFES SEV
101: IADVEKLFES SEV
001: MATIRNLKIK TSTCKRIVKE LHSYEKEVER EAAKTADMKD KGADPYDLKQ QENVLGESRM MIPDCHKRLE SALADLKSTL AELEETDEKE GPEIEDAKKT
101: VADVEKQFPT EDA
101: VADVEKQFPT EDA
Arabidopsis Description
TFCATubulin-folding cofactor A [Source:UniProtKB/Swiss-Prot;Acc:O04350]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.